DN621027

Overview
NameDN621027
Unique NameDN621027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621027 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.877e-23
Identity = 64/166 (38.55%), Postives = 96/166 (57.83%), Query Frame = 2
Query:   32 PVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 529
            PV K +I+PRG A G+    P ++       SR  +  ++ V +GGRVAEE+IFG+  VT+GAS+DF Q + VAR MV ++G SK++G V+          G+ MS++      T  +++ EV+  VE AY  AK I+  H   LH LA  L+E ET+ G +  ++
Sbjct:  505 PVHKATIVPRGMALGMVAQLPDKDETS---VSRKQMLARLDVCMGGRVAEELIFGDSEVTSGASSDFQQATAVARAMVTKYGMSKQLGFVSYNYEDD----GKSMSTE------TRLLIEKEVKCFVENAYNNAKNILIKHNKELHALANALLEHETLTGAQIKNI 657          
BLAST of DN621027 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.758e-23
Identity = 63/176 (35.80%), Postives = 101/176 (57.39%), Query Frame = 2
Query:    2 LVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 529
            + G  +   DP+ K+SIIPRG+  G   + P E+ L    Y++  L ++M + LGGRV+EE+ FG   +TTGA +D  +V++ A   + +FG ++K+G ++   P         M  +K YS ATA ++D EVR L+  AY R   ++T     + K+A LL+EKE +D  + + L
Sbjct:  579 VAGWYLEHADPLLKVSIIPRGKGLGYAQYLPKEQYL----YTKEQLLDRMCMTLGGRVSEEIFFGR--ITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQG-----DMVLEKPYSEATARMIDDEVRILISDAYRRTVALLTEKKADVEKVALLLLEKEVLDKNDMVQL 743          
BLAST of DN621027 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.758e-23
Identity = 63/176 (35.80%), Postives = 101/176 (57.39%), Query Frame = 2
Query:    2 LVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 529
            + G  +   DP+ K+SIIPRG+  G   + P E+ L    Y++  L ++M + LGGRV+EE+ FG   +TTGA +D  +V++ A   + +FG ++K+G ++   P         M  +K YS ATA ++D EVR L+  AY R   ++T     + K+A LL+EKE +D  + + L
Sbjct:  580 VAGWYLEHADPLLKVSIIPRGKGLGYAQYLPKEQYL----YTKEQLLDRMCMTLGGRVSEEIFFGR--ITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQG-----DMVLEKPYSEATARLIDDEVRILINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVEL 744          
BLAST of DN621027 vs. ExPASy Swiss-Prot
Match: YMEL1_MOUSE (ATP-dependent metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.093e-22
Identity = 61/171 (35.67%), Postives = 98/171 (57.31%), Query Frame = 2
Query:   32 PVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGK 544
            P+ K +I+PRG   G     P  +R      +R+ L  QM V++GGRVAEE+IFG +++TTGAS+DF   +++A++MV +FG S+K+G++     G               S  T   ++ E+R L+  +Y RAK I+ TH      LA+ L+  ET+D +E + + ++GK
Sbjct:  557 PINKATIMPRGPTLGHVSLLPENDRWNE---TRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTYSDTG-------------KLSPETQSAIEQEIRILLRESYERAKHILKTHAKEHKNLAEALLTYETLDAKE-IQIVLEGK 710          
BLAST of DN621027 vs. ExPASy Swiss-Prot
Match: YMEL1_HUMAN (ATP-dependent metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.093e-22
Identity = 61/171 (35.67%), Postives = 98/171 (57.31%), Query Frame = 2
Query:   32 PVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGK 544
            P+ K +I+PRG   G     P  +R      +R+ L  QM V++GGRVAEE+IFG +++TTGAS+DF   +++A++MV +FG S+K+G++     G               S  T   ++ E+R L+  +Y RAK I+ TH      LA+ L+  ET+D +E + + ++GK
Sbjct:  615 PINKATIMPRGPTLGHVSLLPENDRWNE---TRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTYSDTG-------------KLSPETQSAIEQEIRILLRDSYERAKHILKTHAKEHKNLAEALLTYETLDAKE-IQIVLEGK 768          
BLAST of DN621027 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.093e-22
Identity = 61/166 (36.75%), Postives = 97/166 (58.43%), Query Frame = 2
Query:   32 PVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 529
            PV K +I+PRG+  G+    P ++      +SR  +   + V++ GRVAEE+IFG+  VT+GAS+DF   +++AR MV ++G SK++G V+          G+ MS++      T  +++ EV+ L+E AY  AK I+T H    H LAQ L+E ET+ G +   +
Sbjct:  498 PVHKATIVPRGRTLGMVSQLPEKDETS---FSRKQMLAWLDVSMAGRVAEELIFGDSEVTSGASSDFQNATKMARAMVTKYGMSKQLGFVSYNYEDD----GKSMSTE------TRLLIEQEVKSLLENAYNNAKTILTKHSKEHHVLAQALLEHETLTGAQIKKI 650          
BLAST of DN621027 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.436e-22
Identity = 61/171 (35.67%), Postives = 97/171 (56.73%), Query Frame = 2
Query:   32 PVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGK 544
            P+ K +I+PRG   G     P  +R       R+ L  QM V++GGRVAEE+IFG +++TTGAS+DF   +++A++MV +FG S+K+G++     G               S  T   ++ E+R L+  +Y RAK I+ TH      LA+ L+  ET+D +E + + ++GK
Sbjct:  557 PINKATIMPRGPTLGHVSLLPENDRWNE---IRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLGVMTYSDTG-------------KLSPETQSAIEQEIRILLRESYERAKHILKTHAKEHKNLAEALLTYETLDAKE-IQIVLEGK 710          
BLAST of DN621027 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.256e-22
Identity = 61/176 (34.66%), Postives = 101/176 (57.39%), Query Frame = 2
Query:    2 LVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 529
            LV  L  +  P+ K++IIPRG+AGGLT F   ++       +R+ L  Q+ V +GGRV EE++FG + VT GA++DF + + +A+ MV+RFGFS KIG   I             +  +    AT D++D EV +L+  + TR + ++++       LA+ L+  ET+  +E +++
Sbjct:  431 LVALLTADSIPLHKVTIIPRGEAGGLTSFLQEKD---ISFMTRAQLLAQLDVLMGGRVGEELVFGADKVTNGAADDFRKATILAQNMVKRFGFSSKIGPRVIPD-----------TQDEQLGEATRDLIDKEVDQLLNDSLTRVRTLLSSQSKQHKLLAEALLHFETLTKDEVLAV 592          
BLAST of DN621027 vs. ExPASy Swiss-Prot
Match: FTSH_MYCGE (Cell division protease ftsH homolog OS=Mycoplasma genitalium GN=ftsH PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.256e-22
Identity = 68/168 (40.48%), Postives = 92/168 (54.76%), Query Frame = 2
Query:    2 LVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETV 505
            LVG  +   D V KI+IIPRGQAGG T   P    L   L  +S L   +A A+GGR AEE I+G   +TTGAS+DF + + +AR MV + G SK      +G     P  G   S+ K YS  TA  +D E+  ++E  Y +AK II ++   L  L + L+  ET+
Sbjct:  499 LVGLHVHSNDEVQKITIIPRGQAGGYTLSTPKSGDLN--LKRKSDLLAMIATAMGGRAAEEEIYGNLEITTGASSDFYKATNIARAMVTQLGMSK------LGQVQYVPSQGTLPSNVKLYSEQTAKDIDNEINFIIEEQYKKAKTIIKSNRKELELLVEALLIAETI 658          
BLAST of DN621027 vs. ExPASy Swiss-Prot
Match: YME1_CAEEL (Protein YME1 homolog OS=Caenorhabditis elegans GN=ymel-1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.062e-21
Identity = 62/176 (35.23%), Postives = 101/176 (57.39%), Query Frame = 2
Query:    2 LVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQ----KDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEE 517
            LV     +  P+ K++IIPRGQ+ G T   P ++  +    +++ +   + V +GGRVAEE+IFG++ VTTGA++D  + +++A QMV+ FG S K+GL          F  Q   S      D +  TA+++DAE+  +++ +Y RAK I+ T       LA+ L+E ET+  +E
Sbjct:  468 LVSLYTKDATPLHKVTIIPRGQSLGHTAMLPEKDSYQ---LTKAQMLATLDVMMGGRVAEELIFGDDKVTTGAADDLSKATQLAVQMVKVFGMSDKVGL--------RDFTAQDNESALVKVSDLAPQTAELIDAEINRVLQESYKRAKVILETKKKEHQLLAEALLEYETLSADE 632          
The following BLAST results are available for this feature:
BLAST of DN621027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
FTSH5_ORYSJ2.877e-2338.55Cell division protease ftsH homolog 5, mitochondri... [more]
AFG32_MOUSE3.758e-2335.80AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
AFG32_HUMAN3.758e-2335.80AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
YMEL1_MOUSE1.093e-2235.67ATP-dependent metalloprotease YME1L1 OS=Mus muscul... [more]
YMEL1_HUMAN1.093e-2235.67ATP-dependent metalloprotease YME1L1 OS=Homo sapie... [more]
FTSH4_ORYSJ1.093e-2236.75Cell division protease ftsH homolog 4, mitochondri... [more]
YMEL1_RAT2.436e-2235.67ATP-dependent metalloprotease YME1L1 OS=Rattus nor... [more]
YME1_SCHMA9.256e-2234.66Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
FTSH_MYCGE9.256e-2240.48Cell division protease ftsH homolog OS=Mycoplasma ... [more]
YME1_CAEEL2.062e-2135.23Protein YME1 homolog OS=Caenorhabditis elegans GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06C08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621027 ID=DN621027; Name=DN621027; organism=Citrus sinensis; type=EST; length=651bp
TTTAGTTGGGGCTCTCATGCCTGAATATGATCCTGTAGCCAAGATTTCCA
TCATTCCTCGTGGCCAAGCTGGTGGGCTTACCTTTTTCGCTCCAAGTGAA
GAGAGGCTTGAGTCTGGACTTTACAGCAGGAGCTACCTGGAGAATCAGAT
GGCTGTCGCACTTGGTGGAAGGGTTGCAGAAGAAGTCATTTTTGGCGAGG
AAAATGTGACAACAGGAGCATCAAATGACTTCATGCAAGTTTCACGGGTA
GCACGGCAGATGGTTGAAAGATTTGGGTTTAGCAAGAAAATTGGACTAGT
TGCCATTGGAGGACCTGGTGGAAATCCATTCTTGGGTCAACAAATGTCTT
CTCAGAAAGACTACTCCATGGCAACTGCCGATGTGGTGGATGCAGAGGTC
AGAGAATTGGTTGAAACAGCATATACAAGGGCCAAGCAGATCATCACAAC
CCACATTGACATCCTTCACAAGCTTGCTCAACTCCTCATAGAGAAAGAAA
CCGTTGATGGAGAAGAATTTATGAGCCTTTTCATTGATGGAAAAGCTGAG
CTATTTGTTGCCTGATTGTACATGAAAGAATCAGAATTCAGATTCGTGTT
GTATATGCCCATGTAAAATCAAGTAATTAAATTATCATTTTAGAAAAAAA
A
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