DN621025

Overview
NameDN621025
Unique NameDN621025
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODPA_ACHLA (Pyruvate dehydrogenase E1 component subunit alpha (Fragment) OS=Acholeplasma laidlawii GN=pdhA PE=4 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.823e-23
Identity = 60/170 (35.29%), Postives = 95/170 (55.88%), Query Frame = -2
Query:  223 RNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTK-YRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEK-TEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQ 726
            +NN WAIST + +   S+ +  KG A+GI  I+VDGND LA+Y A + A + A     P L+EA TYR+G H+TSDD    YRT +E   W  ++  I RF+ ++  +G+WSE+E+ +L   +  ++    +  E       + E+F   Y      L EQ ++ K+ ++
Sbjct:  174 QNNQWAISTPVRKASNSETLAQKGVAFGIPYIQVDGNDMLAMYVASKEAMDRARKGDGPTLIEAFTYRMGPHTTSDDPCSIYRTKEEENEW-AKKDQIARFKTYLINKGYWSEEEDKKLEEEVLAEINDTFKKVESYGANVELIEIFEHTYAEMTPQLKEQYEEHKKYLE 342          
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODBA_PSEPU (2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas putida GN=bkdA1 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.018e-19
Identity = 62/169 (36.69%), Postives = 87/169 (51.48%), Query Frame = -2
Query:  238 NNGWAIST-NISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEK------TEKPAITELFSDVYDVPPSNLAEQEKQL 723
            NN WAIST        S     +G   GI S+RVDGND +AVY A + A E A     P L+E +TYR G HSTSDD +KYR  D+  ++     PI R +  + + G WSE+E     +  +  ++ A + AE+         P+   +F DVY   P +L  Q ++L
Sbjct:  241 NNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPL-GDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEMPDHLRRQRQEL 408          
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODBA_PSEAE (2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas aeruginosa GN=bkdA1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.169e-18
Identity = 63/170 (37.06%), Postives = 86/170 (50.59%), Query Frame = -2
Query:  238 NNGWAISTNISEQFRSDGIVVKGRAYG--IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEK------TEKPAITELFSDVYDVPPSNLAEQEKQL 723
            NN WAIST        +G     R  G  I S+RVDGND LAVY A + A E A     P L+E +TYR G HSTSDD +KYR  D+   +     PI R +  +   G WSE++      +++ ++L A + AE          P+   +F DVY   P +L  Q ++L
Sbjct:  241 NNQWAIST-FQAIAGGEGTTFANRGVGCGIASLRVDGNDFLAVYAASEWAAERARRNLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWTNFPL-GDPIARLKRHMIGLGIWSEEQHEATHKALEAEVLAAQKQAESHGTLIDGRVPSAASMFEDVYAELPEHLRRQRQEL 408          
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODPA_MYCPN (Pyruvate dehydrogenase E1 component subunit alpha OS=Mycoplasma pneumoniae GN=pdhA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 56/164 (34.15%), Postives = 88/164 (53.66%), Query Frame = -2
Query:  232 NNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 723
            NN +AIST    +     +  K  A  I  IRVDGND +A Y A+  A   A S   PVL+E  ++R G H+TSDD + YRT +E E    +  P+ R RN++  +G  + Q+E E+ + I++++  A +V        + E+F   Y+    +LA Q+ + K+
Sbjct:  192 NNQFAISTRTKLESAVSDLSTKAIAVNIPRIRVDGNDLIASYEAMHEAANYARSGNGPVLIEFFSWRQGPHTTSDDPSIYRTKEE-EAEAMKSDPVKRLRNFLFDRGILTPQQEEEMVAKIEQEVQAAYEVMVSKTPVTLDEVFDYNYEKLTPDLARQKAEAKK 354          
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODPA_MYCGE (Pyruvate dehydrogenase E1 component subunit alpha OS=Mycoplasma genitalium GN=pdhA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.761e-17
Identity = 59/172 (34.30%), Postives = 89/172 (51.74%), Query Frame = -2
Query:  208 NNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQD 723
            NN +AIST    +     + VK  A GI  +RVDGND +A Y A+Q A   A     PVL+E  +YR G H+TSDD + YRT  E E    +  P+ R RN++  +   ++ +E E+ S I++++  A +        ++ E+F   Y      L EQ    K+I + Y +D
Sbjct:  192 NNQFAISTRTKLESAVSDLSVKAIACGIPRVRVDGNDLIASYEAMQDAANYARGGNGPVLIEFFSYRQGPHTTSDDPSIYRTKQE-EEEGMKSDPVKRLRNFLFDRSILNQAQEEEMFSKIEQEIQAAYEKMVLDTPVSVDEVFDYNYQELTPELVEQ----KQIAKKYFKD 358          
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODPA_RHIME (Pyruvate dehydrogenase E1 component subunit alpha OS=Rhizobium meliloti GN=pdhA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.912e-17
Identity = 46/147 (31.29%), Postives = 81/147 (55.10%), Query Frame = -2
Query:  283 NNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDV 723
            NN +A+ T++S          +G ++GI   +VDG D  AV  A   A E   S K P+++E LTYR   HS SD + KYR+ DE++  ++E  PI + +  +  +GW +E E  ++   ++  +  +   A+   +P ++EL++D+
Sbjct:  201 NNRYAMGTSVSRASAQTDFSQRGASFGIPGYQVDGMDVRAVKAAADEAVEHCRSGKGPIILEMLTYRYRGHSMSDPA-KYRSKDEVQKMRSEHDPIEQVKARLTDKGWATEDELKQIDKEVRDIVADSADFAQSDPEPDVSELYTDI 346          
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODPT_ASCSU (Pyruvate dehydrogenase E1 component subunit alpha type II, mitochondrial (Fragment) OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.092e-16
Identity = 50/169 (29.59%), Postives = 86/169 (50.89%), Query Frame = -2
Query:  217 NNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTY 723
            NNG+ + T+ +    S     +G    +    VDG D LAV  A++  +E   + K P+++E  TYR G HS SD  T YRT +EI+  +  R PI  F++ +   G  +E E  E+   I+K++  A++ A   ++  +  L +D+Y   P+       +  +++Q Y
Sbjct:  215 NNGYGMGTSAARSSASTDYYTRGDY--VPGFWVDGMDVLAVRQAIRWGKEWCNAGKGPLMIEMATYRYGGHSMSDPGTSYRTREEIQEVRKTRDPITGFKDKIVTAGLVTEDELKEVDKEIRKEVDAAVKQAHTDKEAPVEMLLTDIYYNTPAQYVRCTTE--DVLQQY 379          
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODPA_ASCSU (Pyruvate dehydrogenase E1 component subunit alpha type I, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15
Identity = 50/169 (29.59%), Postives = 85/169 (50.30%), Query Frame = -2
Query:  217 NNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTY 723
            NNG+ + T  +    S     +G    +  I VDG D LAV  AV+ A+E   + K P+++E  TYR   HS SD  T YRT +E++  +  R PI  F++ +   G  +E E  E+   ++K++  A++ A   ++  +  + +D+Y   P+          E++Q Y
Sbjct:  220 NNGYGMGTAAARSSASTDYYTRGDY--VPGIWVDGMDVLAVRQAVRWAKEWCNAGKGPLMIEMATYRYSGHSMSDPGTSYRTREEVQEVRKTRDPITGFKDKIVTAGLVTEDEIKEIDKQVRKEIDAAVKQAHTDKESPVELMLTDIYYNTPAQYVRCTTD--EVLQKY 384          
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODPA_RICBR (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=pdhA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.064e-15
Identity = 44/148 (29.73%), Postives = 82/148 (55.41%), Query Frame = -2
Query:  280 NNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 723
            NN +++ T+++       +  KG ++GI+  +++G D   +Y  V+ A E       P+++E  TYR   HS SD + KYR+ +E+E +K ER PI   R  +    + SE +  E+  S+K+ + +A++ +E +  P   EL++ +Y
Sbjct:  180 NNEYSMGTSVARSTFMRDLYKKGESFGIKGFQLNGMDFEEMYDGVKQAAEYVRENSMPLILEVKTYRYRGHSMSDPA-KYRSKEEVETYK-ERDPITEIRKIILENNYASEADLKEIEQSVKEIVKEAVEFSENSPLPNEEELYTQIY 325          
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODPA_CAEEL (Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=T05H10.6 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.282e-14
Identity = 54/179 (30.17%), Postives = 87/179 (48.60%), Query Frame = -2
Query:  187 NNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYPTDVPV 723
            NNG+ + T       S     +G    +  I VDG D LAV  A + A+E   S K P+++E  TYR   HS SD  T YRT +EI+  +  R PI  F++ +      +E+E   +   ++K++ +A+++A          L++D+Y   P+    QE +   I +T  Q + T   V
Sbjct:  218 NNGFGMGTTAERSSASTEYYTRGDY--VPGIWVDGMDILAVREATKWAKEYCDSGKGPLMMEMATYRYHGHSMSDPGTSYRTREEIQEVRKTRDPITGFKDRIITSSLATEEELKAIDKEVRKEVDEALKIATSDGVLPPEALYADIYHNTPA----QEIRGATIDETIVQPFKTSADV 390          
The following BLAST results are available for this feature:
BLAST of DN621025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPA_ACHLA7.823e-2335.29Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODBA_PSEPU4.018e-1936.692-oxoisovalerate dehydrogenase subunit alpha OS=Ps... [more]
ODBA_PSEAE1.169e-1837.062-oxoisovalerate dehydrogenase subunit alpha OS=Ps... [more]
ODPA_MYCPN9.896e-1834.15Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_MYCGE3.761e-1734.30Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RHIME4.912e-1731.29Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPT_ASCSU7.092e-1629.59Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_ASCSU1.210e-1529.59Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICBR2.064e-1529.73Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_CAEEL2.282e-1430.17Probable pyruvate dehydrogenase E1 component subun... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06C07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621025 ID=DN621025; Name=DN621025; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTACTATAATTACGTATAGATTGCTTTATTACTATC
AAAATGTACATAGCATGTAGAAACTTACTGACGCTACATTTTTCATTTAT
ATGGAGTTTTCAGGAGTTTTATTTTTTATCTTTCCTTTTCCCCCCTTTAT
TCTACACATTTTATTGAAGTAGCCACGTGAAATCTATACAGGAACATCAG
TGGGATAGTCTTGTGGATATGTTTGAATAATTTCTTTCAGCTGTTTCTCT
TGCTCAGCAAGGTTTGATGGGGGAACATCATATACATCGGAGAACAGTTC
TGTAATCGCCGGCTTTTCTGTTTTCTCTGCAACTTGAATTGCTTGCAACA
ACTGTTTCTTGATGCTACTTCGAAGCTCGGTTTCTTCTTGCTCACTCCAC
CAGCCTTGCCTTTCCACCCAATTCCTAAATCTATTGATAGGACTTCGTTC
TGTTTTCCAGTACTCGATTTCATCAAGTGTTCGGTATTTGGTGGAATCAT
CTGAGGTTGAGTGATGTCCTACTCGATATGTAAGGGCCTCTACTAACACA
GGTCTCTTTTCACTGATAGCCATTTCACGAGCTGCCTGAACTGCAGTATA
AACAGCAAGTGCATCATTTCCATCTACTCGTATGCTTCGGATGCCATATG
CACGACCCTTAACAACAATACCATCGCTTCGAAATTGTTCTGATATATTG
GTACTAATGGCCCAGCCATTGTTGCGA
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