DN620945

Overview
NameDN620945
Unique NameDN620945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 4.137e-38
Identity = 70/128 (54.69%), Postives = 93/128 (72.66%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTY-SGAQFR 379
            FD++QP ++ I  YRAG++PV Y+RVPC ++GG+RFTINGH YFNLVL+TNV   G + ++ I GS  T W PM RNWG NW S +YL GQ LSF+VT  DG+T+   N+ P+ W FG+T+ S  QF+
Sbjct:  151 FDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQTFASKLQFK 278          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 9.216e-38
Identity = 69/122 (56.56%), Postives = 90/122 (73.77%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSG 367
            FDLS  +F  IA+Y+AGVVPV Y+R+PC + GG++F   G+ YF +VLI NVGGAGD+  V +KG++TGW  M +NWGQNW + T L GQ LSF+VTTSDG T   +NV P +W FG+T+ G
Sbjct:  148 FDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNWGFGQTFDG 269          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.572e-37
Identity = 69/125 (55.20%), Postives = 92/125 (73.60%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGS-RTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQ 373
            FDLS P F  IAQ +AG+VP++Y+RVPC + GGIR+TI G+ YFNLV+++NVGGAGDV  +S+KG+ R  W P+ RNWGQ WQ++  L G+SL+F+V T D R  TS++V P  W FG TY   +
Sbjct:  142 FDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGDVAGLSVKGNKRVKWTPLKRNWGQEWQTSEVLTGESLTFRVMTGDHRKATSWHVLPPDWQFGVTYQATK 266          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.572e-37
Identity = 69/128 (53.91%), Postives = 93/128 (72.66%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTY-SGAQFR 379
            FD++QP ++ I  Y AG++PV Y+RVPC ++GG+RFTINGH YFNLVL+TNV   G + ++ I GS  T W PM RNWG NW S +YL GQ+LSF+VT  DG+T+   N+ P+ W FG+T+ S  QF+
Sbjct:  135 FDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGWKFGQTFTSKLQFK 262          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.682e-37
Identity = 69/128 (53.91%), Postives = 93/128 (72.66%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTY-SGAQFR 379
            FD++QP ++ I  YRAG++PV Y+RVPC ++GG+RFTINGH YFNLVL+TNV   G + ++ + GS  T W PM RNWG NW S +YL GQ LSF+VT  DG+T+   N+ P+ W FG+T+ S  QF+
Sbjct:  153 FDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQTFASKLQFK 280          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 3.502e-37
Identity = 70/121 (57.85%), Postives = 89/121 (73.55%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYS 364
            FD+SQP ++ I  YRAG+VPV Y+RV C RRGG+RFT+ G  +F LVL+ NV G+G V AVS++G+ TGW  MSRNWG NWQS   L GQ LSF VTT+ G+ +   +VAPA W FG+T+S
Sbjct:  128 FDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGWKFGQTFS 248          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 5.974e-37
Identity = 67/122 (54.92%), Postives = 90/122 (73.77%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSG 367
            FDLS  +F  IA+Y+AGVVPV Y+R+PC + GG++F   G+ YF +VLI NVGGAGD+  V +K ++TGW  M +NWGQNW ++T L GQ LSF+VTT+DG T   +NV P +W FG+T+ G
Sbjct:  154 FDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNWGFGQTFDG 275          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.019e-36
Identity = 67/118 (56.78%), Postives = 89/118 (75.42%), Query Frame = 2
Query:   23 FQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 376
            F+ IA ++AGV+P+ Y+RV C R GG+RF + G S+F  VLI+NVGGAGDV +V IKG+ +GW  M RNWGQ W  N+   GQ LSF++T+SDG+T+T+YNV P  W FG+TY+G QF
Sbjct:  138 FEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEWDFGKTYTGKQF 255          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.331e-36
Identity = 70/125 (56.00%), Postives = 91/125 (72.80%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 376
            F L    F+ IA ++AG +PV Y+R+ C + G +RFT++G   F  VLITNV G+GD+ AV IKGSRTGW PM RNWGQNW  N  L  Q+LSF+VT+SD  TVTSYNV+P +W++G+T+ G QF
Sbjct:  139 FVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEGKQF 263          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.270e-36
Identity = 67/128 (52.34%), Postives = 90/128 (70.31%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG-WQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTY-SGAQFR 379
            FD++QP ++ I  Y AG++PV Y+RVPC ++GG+RFTINGH YF LVL+TNV  AG + ++ + GS T  W PM+RNWG  W S  YL GQ LSF+VT +D +T+   NV P  W FG+T+ S  QF+
Sbjct:  140 FDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADWMPMARNWGAQWHSLAYLTGQGLSFRVTNTDDQTLVFTNVVPPGWKFGQTFASKLQFK 267          
The following BLAST results are available for this feature:
BLAST of DN620945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXP24_ORYSJ4.137e-3854.69Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ARATH9.216e-3856.56Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP32_ORYSJ1.572e-3755.20Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ1.572e-3753.91Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ2.682e-3753.91Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ3.502e-3757.85Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP26_ARATH5.974e-3754.92Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP10_ORYSJ1.019e-3656.78Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH1.331e-3656.00Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP23_ORYSJ2.270e-3652.34Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06A12_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620945 ID=DN620945; Name=DN620945; organism=Citrus sinensis; type=EST; length=570bp
TTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATACAGAGCTG
GAGTTGTCCCTGTAGCTTACAAGAGGGTACCCTGCGGAAGAAGGGGAGGC
ATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTTGATCAC
CAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGGTCTA
GAACTGGCTGGCAGCCCATGTCAAGAAACTGGGGCCAAAACTGGCAAAGC
AACACTTATCTCAATGGCCAAAGCCTGTCATTTAAGGTCACCACAAGCGA
TGGCCGCACTGTGACTTCCTACAATGTTGCCCCTGCTAGCTGGTCCTTTG
GCCGAACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCATTAG
AGATTGGGTTTTAACACCTTTTTTAGCTAAATATTCGTGTACTAAGTAGT
ATATTTTAGTATGAAATTTTAGCATACTAGGGTATATATATATATATATA
ATATAGAAGTAGCTATGTGGCTAGTTTTTGGCTTCCAGGGTCAAAAATGA
AAAAAAGGGGCTTATTTTAA
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