DN620945

Overview
NameDN620945
Unique NameDN620945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 3.872e-36
Identity = 66/122 (54.10%), Postives = 86/122 (70.49%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSG 367
            FDLS P+F  IAQY+AGVVPV Y+R+ C R GG++F   G+ YF ++L  NVGGAGD+  + +KG +TGW  M +NWGQNW +   L GQ +SF+VTTSDG T    NV P +W FG+T+ G
Sbjct:  151 FDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDG 272          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 3.872e-36
Identity = 66/122 (54.10%), Postives = 86/122 (70.49%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSG 367
            FDLS P+F  IAQY+AGVVPV Y+R+ C R GG++F   G+ YF ++L  NVGGAGD+  + +KG +TGW  M +NWGQNW +   L GQ +SF+VTTSDG T    NV P +W FG+T+ G
Sbjct:  144 FDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNWGFGQTFDG 265          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 5.057e-36
Identity = 67/124 (54.03%), Postives = 92/124 (74.19%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQ 373
            FD+SQP +++I  Y AG+VP+ Y++V C R GG+RFTI G +YF LVL+TN+ G+G + ++S+KGS TGW  MSRNWG NWQ    L GQ+LSF VT++ G+T+   +V PA WSFG+T+S  Q
Sbjct:  122 FDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGWSFGQTFSTYQ 245          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 5.057e-36
Identity = 67/128 (52.34%), Postives = 91/128 (71.09%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRT-GWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTY-SGAQFR 379
            FD++QP ++ I  YR G++PV Y+RVPC ++GG+RFTINGH YF LVL+TNVG AG + A+ +KGS++  W  M+ NWG  W S  YL GQ LSF+VT +DG+T+   NV    W FG+T+ S  QF+
Sbjct:  135 FDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGWRFGQTFASNIQFK 262          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.605e-36
Identity = 69/128 (53.91%), Postives = 99/128 (77.34%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTT-SDGRTVTSYNVAPASWSFGRTY-SGAQFR 379
            FD+++P F  +A +RAG++PVAY+RVPC R GG+RF   G+SY+ L+ + NVGGAGD+ ++++KGSRT W  MS NWG ++Q+ + L GQSLSF+VT+ + G T+ ++NVAPA+WS G+TY S A FR
Sbjct:  135 FDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANWSGGKTYKSTANFR 262          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 6.605e-36
Identity = 71/124 (57.26%), Postives = 91/124 (73.39%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQ 373
            FD+SQP ++ I  Y+AG+VPV Y+RV C R+GG+RFT+ G +YF LVLITNV G+G V +  IKG+ TGW  MSRNWG NWQS   L GQ+LSF VTT+ G+ +   +VAPA W FG+T+S  Q
Sbjct:  129 FDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGWIQMSRNWGANWQSLAGLAGQALSFAVTTTGGQYLQFQDVAPAWWQFGQTFSTYQ 252          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.626e-36
Identity = 64/121 (52.89%), Postives = 91/121 (75.21%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYS 364
            FD+SQP +++I  Y AG++P+ Y++V C R GG+RFTING +YF LVL+TN+ G+G + ++S+KGS TGW  M+RNWG NWQ    L GQ+LSF VT++ G+T+   +  PA WSFG+T+S
Sbjct:  122 FDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 242          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.127e-35
Identity = 69/125 (55.20%), Postives = 88/125 (70.40%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 376
            F++S+  F  +A+ +A +VPV ++RV C R GG+RFTI G + F  VLITNV   G+V AV +KGSRTGW PM RNWGQNWQ +  L GQ LSF+VT   GRTV +Y+VAP  W F +T+ G QF
Sbjct:  134 FEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDWMFAQTFEGKQF 258          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.471e-35
Identity = 64/124 (51.61%), Postives = 93/124 (75.00%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQ 373
            FD+++P +  I  Y+AG++PV Y++V C R+GGIRFT+ G ++F LVL++NV G+G V +VS+KG  TGW  ++RNWG NWQ N+ L GQ+LSF VT++ G+T+  YNV P+ WSFG T++  Q
Sbjct:  128 FDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVSVKGGSTGWITLNRNWGANWQCNSGLVGQALSFAVTSTGGQTLYIYNVVPSWWSFGMTFTSNQ 251          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.471e-35
Identity = 69/124 (55.65%), Postives = 89/124 (71.77%), Query Frame = 2
Query:    5 DLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 376
            +LS   F  IA+ RA ++P+ Y+RV CGRRGG+RF+++G S+F  VLI+NVG  G+V  V +KG  T W PM+RNWGQNW S+  L GQSLSF+VT   G+T+ SY+VAP  W FG TY G QF
Sbjct:  131 ELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYWRFGMTYQGKQF 254          
The following BLAST results are available for this feature:
BLAST of DN620945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXP25_ARATH3.872e-3654.10Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP23_ARATH3.872e-3654.10Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP18_ORYSJ5.057e-3654.03Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ5.057e-3652.34Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA7_ARATH6.605e-3653.91Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP31_ORYSJ6.605e-3657.26Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP19_ORYSJ8.626e-3652.89Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ORYSJ1.127e-3555.20Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ORYSJ1.471e-3551.61Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ARATH1.471e-3555.65Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06A12_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620945 ID=DN620945; Name=DN620945; organism=Citrus sinensis; type=EST; length=570bp
TTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATACAGAGCTG
GAGTTGTCCCTGTAGCTTACAAGAGGGTACCCTGCGGAAGAAGGGGAGGC
ATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTTGATCAC
CAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGGTCTA
GAACTGGCTGGCAGCCCATGTCAAGAAACTGGGGCCAAAACTGGCAAAGC
AACACTTATCTCAATGGCCAAAGCCTGTCATTTAAGGTCACCACAAGCGA
TGGCCGCACTGTGACTTCCTACAATGTTGCCCCTGCTAGCTGGTCCTTTG
GCCGAACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCATTAG
AGATTGGGTTTTAACACCTTTTTTAGCTAAATATTCGTGTACTAAGTAGT
ATATTTTAGTATGAAATTTTAGCATACTAGGGTATATATATATATATATA
ATATAGAAGTAGCTATGTGGCTAGTTTTTGGCTTCCAGGGTCAAAAATGA
AAAAAAGGGGCTTATTTTAA
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