DN620944

Overview
NameDN620944
Unique NameDN620944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.118e-22
Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = -2
Query:  562 VHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQ 762
            + +VSIKGSRTGW  MSRNWG NWQSN YL+GQSLSFKVT+SDG+T+T  +VAPA W+FG+T+S +Q
Sbjct:  192 IQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGWTFGQTFSTSQ 258          
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.118e-22
Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = -2
Query:  559 VHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 762
            V AVS+KGSR+GWQ MS NWG NWQ+   L+GQ LSF+VT SDGRTVTS NVAP+ WSFG+T+SG QF
Sbjct:  181 VTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGWSFGQTFSGGQF 248          
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.461e-22
Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = -2
Query:  556 VHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 762
            ++ VS+KGS+T W  MSRNWGQNWQSN  L GQSLSF+VT SD R+ TS+NVAPA+W FG+T+SG  FR
Sbjct:  193 INGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATWQFGQTFSGKNFR 261          
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.695e-21
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = -2
Query:  556 VSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 753
            VS+KGS T W  +SRNWGQNWQSN  L GQSLSF+V TSDGR+ TS N+AP++W FG+TYSG  FR
Sbjct:  192 VSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNWQFGQTYSGKNFR 257          
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.695e-21
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = -2
Query:  556 SIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 750
            S+KG+ TGW PMSRNWGQNWQSN+ L GQ+LSF+VT SD RT TS+N APA W FG+T+ G  FR
Sbjct:  199 SVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGWHFGQTFEGKNFR 263          
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.046e-20
Identity = 42/65 (64.62%), Postives = 54/65 (83.08%), Query Frame = -2
Query:  556 SIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 750
            S+KGS+TGW  ++RNWGQNWQSN  L GQSLSF+VT+SD RT TS+N+AP++W FG+T+ G  FR
Sbjct:  195 SVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNWQFGQTFVGKNFR 259          
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.784e-20
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = -2
Query:  559 VHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 762
            + AV IKGSRTGW PM RNWGQNW  N  L  Q+LSF+VT+SD  TVTSYNV+P +W++G+T+ G QF
Sbjct:  196 IAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEGKQF 263          
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.975e-20
Identity = 43/74 (58.11%), Postives = 57/74 (77.03%), Query Frame = -2
Query:  559 VHAVSIKGSRTG------WQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 762
            V ++++KGS +G      WQPMSRNWGQNWQSN YL+G++LSF+VT  DGR++T  +VAPA W FG+T+ G QF
Sbjct:  186 VRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVTAGDGRSLTCADVAPAGWQFGQTFEGRQF 259          
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.975e-20
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = -2
Query:  559 VHAVSIKGSRTG-WQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 762
            VHAV++K  R+  WQ +SRNWGQNWQS   L+GQ+LSF+VTT DGR+V S N  P  WSFG+T+SGAQF
Sbjct:  222 VHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQF 290          
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.191e-20
Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = -2
Query:  556 SIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 750
            S+KGSRTGW  +SRNWGQNWQSN  L GQ+LSF+VT SD RT TS+N+ P++W FG+T+ G  FR
Sbjct:  192 SVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNWQFGQTFVGKNFR 256          
The following BLAST results are available for this feature:
BLAST of DN620944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EXPA1_ORYSJ1.118e-2270.15Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP11_ORYSJ1.118e-2270.59Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA3_ARATH9.461e-2266.67Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA9_ARATH4.695e-2168.18Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA7_ORYSJ4.695e-2167.69Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP16_ARATH1.046e-2064.62Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXP13_ARATH1.784e-2063.24Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXPA6_ORYSJ3.975e-2058.11Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ORYSJ3.975e-2063.77Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ARATH5.191e-2064.62Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06A12_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620944 ID=DN620944; Name=DN620944; organism=Citrus sinensis; type=EST; length=763bp
AAAGTAGCACTTTTCCGTTGATTAATTAAAATGAAATGGAAATTTACACC
TCCAATCTCGTACAAATTTAGCCATTACATCCAACGACATAATACTCAGC
CAAATCTGCTGATTACAATTAAACTTGCACTCCAAAAAGTGCTTCTGGGC
AAGCAATTCCAAGAAGCATCAAAAAAAGAGAAGCAGCTATTTCAAACACA
AATGGCGGGTGGAAAAATTTCCACCTCAGCCATCTGTTGCACTTCAACAG
AAACCCCCAAAAAGAAAGGTAAAAAAAGGATCCCCAAGATAATAAGAGGA
TCCCATAATTAGACACCCCACGCAACCATAAAAATCAATTCAAAATGAAA
AAAAATAAGCCATTTTAAAATAAGCCCCTTTTTTTCATTTTTGACCCTGG
AAGCCAAAAACTAGCCACATAGCTACTTCTATATTATATATATATATATA
TACCCTAGTATGCTAAAATTTCATACTAAAATATACTACTTAGTACACGA
ATATTTAGCTAAAAAAGGTGTTAAAACCCAATCTCTAATGGTCTTGGTGG
CTCTAGCGGAATTGAGCACCGGAGTAAGTTCGGCCAAAGGACCAGCTAGC
AGGGGCAACATTGTAGGAAGTCACAGTGCGGCCATCGCTTGTGGTGACCT
TAAATGACAGGCTTTGGCCATTGAGATAAGTGTTGCTTTGCCAGTTTTGG
CCCCAGTTTCTTGACATGGGCTGCCAGCCAGTTCTAGACCCTTTGATTGA
AACAGCATGAACA
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