DN620939

Overview
NameDN620939
Unique NameDN620939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN620939 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = -1 
Query:  510 DEDEAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNENLKPGPTSERNYGLFKPDGSPAYSLGI 731
            D  E  AT +NA  YN NLIK +  + GTP+ P    ++Y++ LFNE+L+  P SE ++GLF  + +P Y L +
Sbjct:  183 DSKEPYATIDNADTYNSNLIKHVFDRTGTPLHPEMTSSVYIYELFNEDLRAPPVSEASWGLFYGNSTPVYLLHV 256
[Close]
BLAST of DN620939 vs. ExPASy Swiss-Prot
Match: E13A_SOLLC (Glucan endo-1,3-beta-glucosidase A OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = -1 
Query:  516 EDEAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNENLKPGPTSERNYGLFKPDGSPAYSL 728
            E    AT ENA  Y  NLI  +    GTP +P   +  Y+FA+F+EN K G  SE+++GLFKPD  P Y L
Sbjct:  263 EGHPSATLENAMTYYTNLINHVKGGAGTPKKPGRTIETYLFAMFDENRKDGKPSEQHFGLFKPDQRPKYQL 333
[Close]
BLAST of DN620939 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = -1 
Query:  516 DEDEAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNENLKPGPTSERNYGLFKPDGSPAYSL 731
            + +E  AT +NA  YN NLI+ + +K GTP RP   ++ Y++ L+NE+ K G  SE+N+GLF  +G P Y L
Sbjct:  280 ETNEPDATLDNANTYNSNLIRHVLNKTGTPKRPGIAVSTYIYELYNEDTKAG-LSEKNWGLFNANGEPVYVL 350
The following BLAST results are available for this feature:
BLAST of DN620939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
E131_ARATH4.059e-1141.89Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E13A_SOLLC5.301e-1146.48Glucan endo-1,3-beta-glucosidase A OS=Solanum lyco... [more]
E132_ARATH5.301e-1144.44Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06A09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620939 ID=DN620939; Name=DN620939; organism=Citrus sinensis; type=EST; length=731bp
TCCTGCGTCTCTCACCCAATACACGCCGTTCACAATAATGACACAGAATG
AAAGATACAACAACAAGAGTGGATGAATAATTAAATTTCCTCTAAATTTA
GATCTAAAAACTAACAATGCCGGTCCACCTCCGATCTACCGTTGACTCAA
GATCAAACTTAACATATTGCACGATCTAAGTTATTGAAATATACACCCCT
TTCCCCAACCCCAAAGCTGTCTCTTATTGTTTCACGGACTTTTAACGGCT
GATTTTGATTATCATGCCTAACGTTGAATGCCGATTCCAAATTTTCTACA
ATCCCTAGCTACAGAAGCAAACTGATTAAAAAGAACACCAGCACGAGCAT
CACGGACCCAACAAACTCATATCTTGCCTTAGTGGCAGAAGAGATGGACA
AATAGCCAGTGGAACCGGAACCAGAATCGGGATCGTTACCAGAGGAAGTA
TCCGGCAGGGCGGGGGGAGTGGGGGAAGCGACAGTGGTGTTGGCGGCGGT
CACCGCACTAATCCCAAGTGAATAAGCCGGGGATCCATCCGGCTTAAACA
GCCCGTAATTTCTCTCAGAAGTAGGTCCAGGCTTCAGATTTTCATTAAAC
AAAGCAAACACATAAATGTTCAAATCACAGTTGGGTCTCATGGGAGTCCC
TTTCTTTGACGAAATCAACTTGATCAAATTTCCATTATACTTCTTTGCAT
TTTCGGGAGTAGCCCCAGCTTCATCCTCATC
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