DN620933

Overview
NameDN620933
Unique NameDN620933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_DANRE (40S ribosomal protein S8 OS=Danio rerio GN=rps8 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 8.626e-36
Identity = 83/176 (47.16%), Postives = 103/176 (58.52%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXDAPATEE---AKKSSHVLRKLEKRQKDRTLDPHIE 569
            MGISRD+ H                 YELGR  ANTK+   + +  IRVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ +V VD+ P++QWY  HY + +GR                   P  EE    K+S  V +K   R+K   + P +E
Sbjct:    1 MGISRDNWHKRRRTGGKRKPVHKKRKYELGRPAANTKIGPRR-IHTIRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHYALPLGRKKGAKL------------TPEEEEILNKKRSKKVQKKFTLRRKTAKISPLLE 163          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_THEAN (40S ribosomal protein S8 OS=Theileria annulata GN=RPS8 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.471e-35
Identity = 74/122 (60.66%), Postives = 91/122 (74.59%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDI 416
            MGISRDS H                 YELGR  +NTKL S + VR++R RGGN+K+RALRLD+GN+SWGS+ VTRKTR++DVVYNAS+NELVRT+TLVK+AIV VD  PFK W+  HYGV++
Sbjct:    1 MGISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGS-RLVRKVRCRGGNLKFRALRLDSGNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGVEL 121          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_RAT (40S ribosomal protein S8 OS=Rattus norvegicus GN=Rps8 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.922e-35
Identity = 80/176 (45.45%), Postives = 105/176 (59.66%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXDAPATEE---AKKSSHVLRKLEKRQKDRTLDPHIE 569
            MGISRD+ H                 YELGR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                   P  EE    K+S  + +K ++R+K+  +   +E
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKL------------TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLE 163          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_MOUSE (40S ribosomal protein S8 OS=Mus musculus GN=Rps8 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.922e-35
Identity = 80/176 (45.45%), Postives = 105/176 (59.66%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXDAPATEE---AKKSSHVLRKLEKRQKDRTLDPHIE 569
            MGISRD+ H                 YELGR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                   P  EE    K+S  + +K ++R+K+  +   +E
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKL------------TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLE 163          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_MACFA (40S ribosomal protein S8 OS=Macaca fascicularis GN=RPS8 PE=2 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.922e-35
Identity = 80/176 (45.45%), Postives = 105/176 (59.66%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXDAPATEE---AKKSSHVLRKLEKRQKDRTLDPHIE 569
            MGISRD+ H                 YELGR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                   P  EE    K+S  + +K ++R+K+  +   +E
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKL------------TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLE 163          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_HUMAN (40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.922e-35
Identity = 80/176 (45.45%), Postives = 105/176 (59.66%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXDAPATEE---AKKSSHVLRKLEKRQKDRTLDPHIE 569
            MGISRD+ H                 YELGR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                   P  EE    K+S  + +K ++R+K+  +   +E
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKL------------TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLE 163          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_BOVIN (40S ribosomal protein S8 OS=Bos taurus GN=RPS8 PE=2 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.922e-35
Identity = 80/176 (45.45%), Postives = 105/176 (59.66%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXDAPATEE---AKKSSHVLRKLEKRQKDRTLDPHIE 569
            MGISRD+ H                 YELGR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                   P  EE    K+S  + +K ++R+K+  +   +E
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKL------------TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLE 163          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_APIME (40S ribosomal protein S8 OS=Apis mellifera GN=RpS8 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.510e-35
Identity = 84/176 (47.73%), Postives = 103/176 (58.52%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXDAPATEEA---KKSSHVLRKLEKRQKDRTLDPHIE 569
            MGISRD  H                 +ELGR  ANTKL   + +  +R RGGN K+RALRLDTGN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+AIV +DA PF+QWY  HY + +GR                    A EE    K+S     K + RQ+   ++P +E
Sbjct:    1 MGISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQR-IHTVRTRGGNKKYRALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGAKL------------TEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALE 163          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8B_SCHPO (40S ribosomal protein S8-B OS=Schizosaccharomyces pombe GN=rps8b PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.278e-35
Identity = 83/173 (47.98%), Postives = 103/173 (59.54%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIE 569
            MGI+RDS H                 +ELGRQP+NT++   K +  +RVRGGN K+RALRLD+GN+SWGSE V++KTRI+ V Y+ SNNELVRT TL KSAIVQ+DAAPF+ WY  HYG+ +G                   A AT    KS HV RK   R  D  +D  +E
Sbjct:    1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGP-KRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG--------------SKGKKATAT-PTPKSKHVQRKHSARLGDSKVDSALE 157          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_SPOFR (40S ribosomal protein S8 OS=Spodoptera frugiperda GN=RpS8 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.591e-35
Identity = 75/124 (60.48%), Postives = 87/124 (70.16%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 422
            MGISRD  H                 YELGR  ANTKL   + +  +R RGGN K+RALRLDTGN+SWGSE  TRK+RI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY  HY + +GR
Sbjct:    1 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLDTGNFSWGSECSTRKSRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGR 123          
The following BLAST results are available for this feature:
BLAST of DN620933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_DANRE8.626e-3647.1640S ribosomal protein S8 OS=Danio rerio GN=rps8 PE... [more]
RS8_THEAN1.471e-3560.6640S ribosomal protein S8 OS=Theileria annulata GN=... [more]
RS8_RAT1.922e-3545.4540S ribosomal protein S8 OS=Rattus norvegicus GN=R... [more]
RS8_MOUSE1.922e-3545.4540S ribosomal protein S8 OS=Mus musculus GN=Rps8 P... [more]
RS8_MACFA1.922e-3545.4540S ribosomal protein S8 OS=Macaca fascicularis GN... [more]
RS8_HUMAN1.922e-3545.4540S ribosomal protein S8 OS=Homo sapiens GN=RPS8 P... [more]
RS8_BOVIN1.922e-3545.4540S ribosomal protein S8 OS=Bos taurus GN=RPS8 PE=... [more]
RS8_APIME2.510e-3547.7340S ribosomal protein S8 OS=Apis mellifera GN=RpS8... [more]
RS8B_SCHPO3.278e-3547.9840S ribosomal protein S8-B OS=Schizosaccharomyces ... [more]
RS8_SPOFR5.591e-3560.4840S ribosomal protein S8 OS=Spodoptera frugiperda ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06A06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620933 ID=DN620933; Name=DN620933; organism=Citrus sinensis; type=EST; length=571bp
CTATCAATCGCCCACGGACAGAGAAACCCTAAGAATTTCTCTCTGCGAAA
ATGGGTATTTCCCGTGATTCCATGCACAAGAGGCGTGCTACTGGGGGCAA
GAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGAAGGCAACCTG
CAAATACTAAGCTATCAAGCAACAAGACAGTGAGGAGGATTAGGGTTCGT
GGAGGTAATGTGAAATGGCGTGCTTTGAGGCTTGACACAGGAAACTACTC
CTGGGGAAGCGAAGCAGTGACTCGTAAGACCAGAATTCTGGATGTGGTAT
ACAATGCCTCCAATAATGAGCTGGTCCGTACTCAAACTTTGGTGAAGAGT
GCCATTGTTCAGGTTGATGCAGCACCATTCAAGCAGTGGTATCTCCAGCA
TTATGGTGTTGACATTGGTCGCAAGAAGAAGGCTGCAGCTGCTGCCACAA
CCGAGAAAGAAGGAGAGGAAGGAGACGCTCCTGCCACTGAGGAGGCAAAG
AAGAGCAGCCATGTCTTGAGAAAGCTTGAGAAGCGTCAAAAAGATCGCAC
ACTTGACCCACATATTGAGGA
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