FC922050

Overview
NameFC922050
Unique NameFC922050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: TAF5_YEAST (Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae GN=TAF5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.352e-12
Identity = 38/102 (37.25%), Postives = 53/102 (51.96%), Query Frame = 1
Query:  250 LQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATICCALH 555
            L  H+G +     SP+    ++YL + S D TV++W++D  T   +  GH   VWD  FS  G Y  TAS D TARLWS      +R++ GH     C + H
Sbjct:  521 LVGHSGTVYSTSFSPD----NKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFH 618          

HSP 2 Score: 72.0182 bits (175), Expect = 4.012e-12
Identity = 57/212 (26.89%), Postives = 89/212 (41.98%), Query Frame = 1
Query:   37 SGDQNGNIRVWDLTANSCS----------------CELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCV-FSVDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATICCAL-HDGAEPSAS*TXNLTSAWIKGT 618
            +G Q+  I++W L  +S +                C+ +      V S +   D   +++ +   T  +W       +M     L   + HN  +     SP       Y ATAS D T ++W+ D     +   GH   V DCV F  +G Y+ T SSD T R+W +STG+ +R++ GH    I  A+  DG   S      + + W  GT
Sbjct:  483 AGFQDSYIKIWSLDGSSLNNPNIALNNNDKDEDPTCKTLVGHSGTVYSTSFSPDNKYLLSGSEDKTVRLW-------SMDTHTALVSYKGHNHPVWDVSFSPL----GHYFATASHDQTARLWSCDHIYPLRIFAGHLNDV-DCVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGT 682          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: TAF5_SCHPO (Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe GN=taf5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.352e-12
Identity = 59/215 (27.44%), Postives = 92/215 (42.79%), Query Frame = 1
Query:   16 PNQTELISGDQNGNIRVWDLTANSCSCEL---VPEVDTAVRSL---------TVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCV-FSVDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATICCAL-HDGAEPSAS*TXNLTSAWIKGT 618
            P+ T +  G Q   IR+W + A+  S      V + D +VR L         T   D   +++ +   +  +W +   T  +         + H G +      P       Y ATAS D T ++W+ D     +   GH   V DCV F  + AY++T SSD T RLW +  G  +RV+ GH +     A+  DG   +++ +  L   W  GT
Sbjct:  334 PDSTMIACGFQESYIRLWSIKADKKSLPKSTSVEDSDGSVRLLSHSGPVYGTTFSPDNKYLLSCSEDASARLWSVDTKTALVA-------YKGHTGPVWDVAFGPF----GHYFATASHDQTAQLWSCDHIYPLRVFAGHLSDV-DCVTFHPNSAYVLTGSSDKTCRLWDVHRGHSVRVFNGHTQPVTAVAIAPDGHTMASADSEGLIHLWDIGT 536          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: FBXW7_DROME (F-box/WD repeat-containing protein 7 OS=Drosophila melanogaster GN=ago PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.352e-12
Identity = 50/181 (27.62%), Postives = 90/181 (49.72%), Query Frame = 1
Query:   10 LHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDIRVYQG---HHKATIC 543
            +H + ++++SG ++  +RVWD+   SC   LV  +  AVR   V +DG L+V+        +W   R        E LH LQ H   +     S +F   H  + + S D ++++W+V+    + TL+GHQ         +    L++ ++D+T ++W ++TG+ ++   G   HH A  C
Sbjct: 1081 MHLHGSKVVSGSRDATLRVWDIEQGSCLHVLVGHL-AAVR--CVQYDGKLIVSGAYDYMVKIWHPERQ-------ECLHTLQGHTNRV----YSLQFDGLH--VVSGSLDTSIRVWDVETGNCKHTLMGHQSLT--SGMELRQNILVSGNADSTVKVWDITTGQCLQTLSGPNKHHSAVTC 1243          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: WDR69_XENLA (WD repeat-containing protein 69 OS=Xenopus laevis GN=wdr69 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.072e-12
Identity = 48/175 (27.43%), Postives = 80/175 (45.71%), Query Frame = 1
Query:   31 LISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATICCALH 555
            LI+G  +  + VW++ +      L+      + S    WD SL+  A+   +C +W  + G    T       L  H+  +L       F    + +ATAS+D T ++++         L GH+  +    F+  G  ++TASSD T+RLW   TGE ++V +GH      CA +
Sbjct:  234 LITGSFDHTVSVWEIPSGRRIHTLIGHRGE-ISSAQFNWDCSLIATASMDKSCKLWDSLNGKCVAT-------LTGHDDEVLDVT----FDSTGQLVATASADGTARVYSASSRKCLAKLEGHEGEISKICFNAQGNRIVTASSDKTSRLWDPHTGECLQVLKGHTDEIFSCAFN 396          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: GBLP_LEIMA (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania major PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.072e-12
Identity = 44/153 (28.76%), Postives = 69/153 (45.10%), Query Frame = 1
Query:   55 NIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKL--QAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDI 507
            +IR+WDL    C  + +      V ++    D  L+V+A       VW +          E +H+     H  ++     SP     H  + + S D+T+K+WNV+G   E+TL GH  +V     S DG+   +   D  A LW +STGE +
Sbjct:   88 SIRMWDLRNGQCQRKFLKHTKD-VLAVAFSPDDRLIVSAGRDNVIRVWNVAG--------ECMHEFLRDGHEDWVSSICFSPSL--EHPIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQL 229          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: GBLP_LEIIN (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.072e-12
Identity = 44/153 (28.76%), Postives = 69/153 (45.10%), Query Frame = 1
Query:   55 NIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKL--QAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDI 507
            +IR+WDL    C  + +      V ++    D  L+V+A       VW +          E +H+     H  ++     SP     H  + + S D+T+K+WNV+G   E+TL GH  +V     S DG+   +   D  A LW +STGE +
Sbjct:   88 SIRMWDLRNGQCQRKFLKHTKD-VLAVAFSPDDRLIVSAGRDNVIRVWNVAG--------ECMHEFLRDGHEDWVSSICFSPSL--EHPIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQL 229          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: GBLP_LEICH (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania chagasi PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.072e-12
Identity = 44/153 (28.76%), Postives = 69/153 (45.10%), Query Frame = 1
Query:   55 NIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKL--QAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDI 507
            +IR+WDL    C  + +      V ++    D  L+V+A       VW +          E +H+     H  ++     SP     H  + + S D+T+K+WNV+G   E+TL GH  +V     S DG+   +   D  A LW +STGE +
Sbjct:   88 SIRMWDLRNGQCQRKFLKHTKD-VLAVAFSPDDRLIVSAGRDNVIRVWNVAG--------ECMHEFLRDGHEDWVSSICFSPSL--EHPIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQL 229          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: WDR69_XENTR (WD repeat-containing protein 69 OS=Xenopus tropicalis GN=wdr69 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.012e-12
Identity = 48/175 (27.43%), Postives = 80/175 (45.71%), Query Frame = 1
Query:   31 LISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATICCALH 555
            LI+G  +  + VW++ +      L+      + S    WD SL+  A+   +C +W  + G    T       L  H   +L       F    + +ATAS+D T ++++         L GH+  +    F+  G  ++TASSD T+RLW+  TGE ++V +GH      CA +
Sbjct:  234 LITGSFDHTVSVWEIPSGRRIHTLIGHRGE-ISSAQFNWDCSLIATASMDKSCKLWDSLNGKCVAT-------LTGHEDEVLDVT----FDSTGQLVATASADGTARVYSASSRKCLAKLEGHEGEISKICFNAQGNRILTASSDKTSRLWNPHTGECLQVLKGHTDEIFSCAFN 396          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: TG125_CAEEL (WD repeat-containing protein tag-125 OS=Caenorhabditis elegans GN=tag-125 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.012e-12
Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  229 NFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATICC 546
            N++ +  L+ H     K + S +F    +YL T+S+D TVKIWN+D    E+TL GH+  V D  +S D   +++AS D T +++ + T    +  +GH+    CC
Sbjct:   76 NYKLMCTLEGHT----KSISSAKFSPCGKYLGTSSADKTVKIWNMDHMICERTLTGHKLGVNDIAWSSDSRCVVSASDDKTLKIFEIVTSRMTKTLKGHNNYVFCC 177          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: WSB2_MOUSE (WD repeat and SOCS box-containing protein 2 OS=Mus musculus GN=Wsb2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.240e-12
Identity = 49/161 (30.43%), Postives = 81/161 (50.31%), Query Frame = 1
Query:   31 LISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLV-VAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDIR 510
            L +G  +G I++W++        L    D  VR L+    GSL+ V+A+   T  +W L +      + + +  L  H  ++  C +SP+ C     L +A+ + +V +W++  +TL + L GHQ  V  C FS D A L+TAS D +  +W   TG  +R
Sbjct:  126 LATGLNDGQIKIWEVQTGLLLLNLSGHQDV-VRDLSFTPSGSLILVSASRDKTLRIWDLNK------HGKQIQVLSGHLQWVYCCSISPD-CS---MLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTSVIMWDPYTGARLR 275          
The following BLAST results are available for this feature:
BLAST of FC922050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
TAF5_YEAST2.352e-1237.25Transcription initiation factor TFIID subunit 5 OS... [more]
TAF5_SCHPO2.352e-1227.44Transcription initiation factor TFIID subunit 5 OS... [more]
FBXW7_DROME2.352e-1227.62F-box/WD repeat-containing protein 7 OS=Drosophila... [more]
WDR69_XENLA3.072e-1227.43WD repeat-containing protein 69 OS=Xenopus laevis ... [more]
GBLP_LEIMA3.072e-1228.76Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEIIN3.072e-1228.76Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEICH3.072e-1228.76Guanine nucleotide-binding protein subunit beta-li... [more]
WDR69_XENTR4.012e-1227.43WD repeat-containing protein 69 OS=Xenopus tropica... [more]
TG125_CAEEL4.012e-1233.96WD repeat-containing protein tag-125 OS=Caenorhabd... [more]
WSB2_MOUSE5.240e-1230.43WD repeat and SOCS box-containing protein 2 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1DA01RM1 SLH Citrus sinensis cDNA clone KN0AAM1DA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922050 ID=FC922050; Name=FC922050; organism=Citrus sinensis; type=EST; length=765bp
ACTGTTGTATTGCACCCAAATCAGACTGAACTGATATCTGGCGACCAAAA
TGGGAATATTCGTGTGTGGGATTTGACAGCAAATTCTTGCAGTTGTGAAC
TGGTGCCAGAGGTAGATACAGCTGTTAGGTCTTTAACAGTTATGTGGGAC
GGAAGCCTGGTAGTTGCTGCTAATAACCATGGAACATGTTATGTTTGGCG
CTTGATGCGTGGGACTCAGACTATGACCAACTTTGAGCCACTTCATAAAC
TACAAGCACATAATGGATACATCCTGAAATGTCTCCTTTCTCCAGAGTTT
TGTGAACCCCACAGATATCTGGCCACTGCATCTTCTGACCACACTGTCAA
GATTTGGAATGTTGATGGTTTCACATTAGAAAAAACCTTGATAGGACATC
AACGATGGGTATGGGACTGTGTTTTCTCTGTAGATGGTGCCTATCTCATA
ACAGCCTCTTCTGATGCGACAGCAAGACTATGGTCTATGTCAACCGGTGA
AGACATCAGAGTGTATCAAGGACACCACAAAGCAACCATTTGTTGTGCTC
TCCATGACGGAGCTGAACCCTCTGCCTCTTGAACCTANAATCTGACATCA
GCTTGGATCAAGGGCACCACCATGCAAACATTTATCATCCTCTCCCTGAT
GCAGCTGAATCTGTACGACTTGAACCTAGATTCTGTTTTGGCTCTCTGGT
GATTGTGAGTGCATAATAACAACAGCTTGGATCAAGGGCACCACCATGCA
AACATTTATCATCCT
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