FC922050

Overview
NameFC922050
Unique NameFC922050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: WDR5_XENTR (WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.601e-11
Identity = 45/185 (24.32%), Postives = 84/185 (45.41%), Query Frame = 1
Query:   13 HPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFS----VDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATICCALH 555
            +P    ++SG  + ++R+WD+    C  + +P     V ++    DGSL+V+++  G C +W    G    T  +        N  +     SP      +Y+  A+ D+T+K+W+       KT   H+   + C+F+      G ++++ S D    +W++ T E ++  QGH    I  A H
Sbjct:  138 NPQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVKFSPN----GKYILAATLDNTLKLWDYSKGKCLKTYTCHKNEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEVVQKLQGHTDVVISTACH 310          

HSP 2 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 30/90 (33.33%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  277 KCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATICC 546
            K + S +F     +LA++S+D  +KIW       EKT+ GH+  + D  +S D   L++AS D T ++W +S+G+ ++  +GH     CC
Sbjct:   46 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 135          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: WDR5B_PONAB (WD repeat-containing protein 5B OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.601e-11
Identity = 47/193 (24.35%), Postives = 84/193 (43.52%), Query Frame = 1
Query:   13 HPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPE--------FCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFS----VDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATICCALH 555
            +P    +ISG  +  +++W++    C   L    D  V ++     GSL+V+ +  G C +W                   A +G  LK L+  +        F    +Y+ TA+ D+T+K+W+       KT  GH+   + C+F+      G ++++ S D    +W++ T E ++  QGH    I  A H
Sbjct:  134 NPPSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDP-VSAVHFNCSGSLIVSGSYDGLCRIW------------------DAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACH 306          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: WDR5B_HUMAN (WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.601e-11
Identity = 47/193 (24.35%), Postives = 84/193 (43.52%), Query Frame = 1
Query:   13 HPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPE--------FCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFS----VDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATICCALH 555
            +P    +ISG  +  +++W++    C   L    D  V ++     GSL+V+ +  G C +W                   A +G  LK L+  +        F    +Y+ TA+ D+T+K+W+       KT  GH+   + C+F+      G ++++ S D    +W++ T E ++  QGH    I  A H
Sbjct:  134 NPPSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDP-VSAVHFNCSGSLIVSGSYDGLCRIW------------------DAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACH 306          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: TAF5_DROME (Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.601e-11
Identity = 34/107 (31.78%), Postives = 53/107 (49.53%), Query Frame = 1
Query:  235 EPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATICCALH 555
            E    L  H G + +C  +PE       L + S D T+++W++  ++   T  GH   VWD  F+  G Y ++ S D TARLW+  + + +RV+ GH     C   H
Sbjct:  441 EVTRSLMGHTGPVYRCAFAPEM----NLLLSCSEDSTIRLWSLLTWSCVVTYRGHVYPVWDVRFAPHGYYFVSCSYDKTARLWATDSNQALRVFVGHLSDVDCVQFH 543          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: LIN23_CAEEL (F-box/WD repeat-containing protein lin-23 OS=Caenorhabditis elegans GN=lin-23 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.601e-11
Identity = 46/184 (25.00%), Postives = 85/184 (46.20%), Query Frame = 1
Query:   10 LHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMT---NFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDG---FTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATIC 543
            L  +  +++SG ++  I++WD    SCS  L     +    L + +D  ++++ ++  T  VW +  G    T   + E +  L+  NG ++ C                S D ++ +W++      T+ + L+GH+  V   V   D  Y+++AS D T ++WSM T E +R   GH +   C
Sbjct:  228 LQYDDDKIVSGLRDNTIKIWDRKDYSCSRILSGHTGSV---LCLQYDNRVIISGSSDATVRVWDVETGECIKTLIHHCEAVLHLRFANGIMVTC----------------SKDRSIAVWDMVSPRDITIRRVLVGHRAAV--NVVDFDDRYIVSASGDRTIKVWSMDTLEFVRTLAGHRRGIAC 390          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: TUP1_DICDI (General transcriptional corepressor tupA OS=Dictyostelium discoideum GN=tupA PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.397e-11
Identity = 48/181 (26.52%), Postives = 80/181 (44.20%), Query Frame = 1
Query:   31 LISGDQNGNIRVWDLTANSCSCELVPEV---DTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEK----TLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATICCAL 552
            ++SG  +   ++WD+    C+  L  E       V S+ +  DG LV A +      +W    G          + L+ + G+ L  + S  F    + LA+ S D ++K+W++ G         T  GH+ +V    FS DG++LI+ S D + + W    G    + QGH  + I  AL
Sbjct:  384 IVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPKNGVTSVAMSPDGRLVAAGSLDNIVRLWDAQTG----------YFLERYEGH-LDSVYSVAFSPDGKSLASGSLDKSLKLWDLSGSRSRSRCRATFNGHKDFVLSVAFSPDGSWLISGSKDRSVQFWDPRNGTTHMMLQGHKNSVISVAL 553          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: SMU1_XENLA (WD40 repeat-containing protein SMU1 OS=Xenopus laevis GN=smu1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.436e-11
Identity = 47/169 (27.81%), Postives = 76/169 (44.97%), Query Frame = 1
Query:   16 PNQTELISGDQNGNIRVWDLTANSCSCELVPE-------VDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGE 501
            P+   L++G  +G I VW+ T      +L  +       +D AV  +    D  ++      G   VW++  G Q +  FE  H         + CL    F +    + +AS D T++I  +      K   GH  +V +  F+ DG Y+I+ASSD T ++W+M T E
Sbjct:  224 PDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSG-QCLRRFERAHSKG------VTCL---SFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTE 382          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: SMU1_RAT (WD40 repeat-containing protein SMU1 OS=Rattus norvegicus GN=Smu1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.436e-11
Identity = 47/169 (27.81%), Postives = 76/169 (44.97%), Query Frame = 1
Query:   16 PNQTELISGDQNGNIRVWDLTANSCSCELVPE-------VDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGE 501
            P+   L++G  +G I VW+ T      +L  +       +D AV  +    D  ++      G   VW++  G Q +  FE  H         + CL    F +    + +AS D T++I  +      K   GH  +V +  F+ DG Y+I+ASSD T ++W+M T E
Sbjct:  224 PDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSG-QCLRRFERAHSKG------VTCL---SFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTE 382          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: SMU1_MOUSE (WD40 repeat-containing protein SMU1 OS=Mus musculus GN=Smu1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.436e-11
Identity = 47/169 (27.81%), Postives = 76/169 (44.97%), Query Frame = 1
Query:   16 PNQTELISGDQNGNIRVWDLTANSCSCELVPE-------VDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGE 501
            P+   L++G  +G I VW+ T      +L  +       +D AV  +    D  ++      G   VW++  G Q +  FE  H         + CL    F +    + +AS D T++I  +      K   GH  +V +  F+ DG Y+I+ASSD T ++W+M T E
Sbjct:  224 PDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSG-QCLRRFERAHSKG------VTCL---SFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTE 382          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: SMU1_HUMAN (WD40 repeat-containing protein SMU1 OS=Homo sapiens GN=SMU1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.436e-11
Identity = 47/169 (27.81%), Postives = 76/169 (44.97%), Query Frame = 1
Query:   16 PNQTELISGDQNGNIRVWDLTANSCSCELVPE-------VDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGE 501
            P+   L++G  +G I VW+ T      +L  +       +D AV  +    D  ++      G   VW++  G Q +  FE  H         + CL    F +    + +AS D T++I  +      K   GH  +V +  F+ DG Y+I+ASSD T ++W+M T E
Sbjct:  224 PDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSG-QCLRRFERAHSKG------VTCL---SFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTE 382          
The following BLAST results are available for this feature:
BLAST of FC922050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
WDR5_XENTR2.601e-1124.32WD repeat-containing protein 5 OS=Xenopus tropical... [more]
WDR5B_PONAB2.601e-1124.35WD repeat-containing protein 5B OS=Pongo abelii PE... [more]
WDR5B_HUMAN2.601e-1124.35WD repeat-containing protein 5B OS=Homo sapiens GN... [more]
TAF5_DROME2.601e-1131.78Transcription initiation factor TFIID subunit 5 OS... [more]
LIN23_CAEEL2.601e-1125.00F-box/WD repeat-containing protein lin-23 OS=Caeno... [more]
TUP1_DICDI3.397e-1126.52General transcriptional corepressor tupA OS=Dictyo... [more]
SMU1_XENLA4.436e-1127.81WD40 repeat-containing protein SMU1 OS=Xenopus lae... [more]
SMU1_RAT4.436e-1127.81WD40 repeat-containing protein SMU1 OS=Rattus norv... [more]
SMU1_MOUSE4.436e-1127.81WD40 repeat-containing protein SMU1 OS=Mus musculu... [more]
SMU1_HUMAN4.436e-1127.81WD40 repeat-containing protein SMU1 OS=Homo sapien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1DA01RM1 SLH Citrus sinensis cDNA clone KN0AAM1DA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922050 ID=FC922050; Name=FC922050; organism=Citrus sinensis; type=EST; length=765bp
ACTGTTGTATTGCACCCAAATCAGACTGAACTGATATCTGGCGACCAAAA
TGGGAATATTCGTGTGTGGGATTTGACAGCAAATTCTTGCAGTTGTGAAC
TGGTGCCAGAGGTAGATACAGCTGTTAGGTCTTTAACAGTTATGTGGGAC
GGAAGCCTGGTAGTTGCTGCTAATAACCATGGAACATGTTATGTTTGGCG
CTTGATGCGTGGGACTCAGACTATGACCAACTTTGAGCCACTTCATAAAC
TACAAGCACATAATGGATACATCCTGAAATGTCTCCTTTCTCCAGAGTTT
TGTGAACCCCACAGATATCTGGCCACTGCATCTTCTGACCACACTGTCAA
GATTTGGAATGTTGATGGTTTCACATTAGAAAAAACCTTGATAGGACATC
AACGATGGGTATGGGACTGTGTTTTCTCTGTAGATGGTGCCTATCTCATA
ACAGCCTCTTCTGATGCGACAGCAAGACTATGGTCTATGTCAACCGGTGA
AGACATCAGAGTGTATCAAGGACACCACAAAGCAACCATTTGTTGTGCTC
TCCATGACGGAGCTGAACCCTCTGCCTCTTGAACCTANAATCTGACATCA
GCTTGGATCAAGGGCACCACCATGCAAACATTTATCATCCTCTCCCTGAT
GCAGCTGAATCTGTACGACTTGAACCTAGATTCTGTTTTGGCTCTCTGGT
GATTGTGAGTGCATAATAACAACAGCTTGGATCAAGGGCACCACCATGCA
AACATTTATCATCCT
back to top