DN620781

Overview
NameDN620781
Unique NameDN620781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620781 vs. ExPASy Swiss-Prot
Match: CHSB_IPOCO (Chalcone synthase B (Fragment) OS=Ipomoea cordatotriloba GN=CHSB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.052e-38
Identity = 80/159 (50.31%), Postives = 107/159 (67.30%), Query Frame = -2
Query:  257 FRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEE 733
            FRGP+    D+L+ Q LF           DP   +E PL++L+S +QTI+P++D  +  H+RE+GLTFH  K VP  I++N+E  L +AF P GISDWNSIFW+ HPGG AI+D VE          +A+R VLS YGN++SACVLFILDE+RKKS ++
Sbjct:  204 FRGPSLQQEDNLLAQCLFGDGSAALIVGTDPRPGLETPLFELISAAQTIIPNTDSHLKLHVREMGLTFHCSKAVPTFITQNVEDCLVKAFEPYGISDWNSIFWVLHPGGNAIVDGVEETLGLAPEKLRASRDVLSGYGNLTSACVLFILDEVRKKSKKD 362          
BLAST of DN620781 vs. ExPASy Swiss-Prot
Match: CHSB_IPOTR (Chalcone synthase B (Fragment) OS=Ipomoea triloba GN=CHSB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.514e-37
Identity = 79/156 (50.64%), Postives = 107/156 (68.59%), Query Frame = -2
Query:  266 FRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKS 733
            FRGP+    D+L+ Q LF           DP   +E PL++LVS++QTI+P++D  +   LRE+GLTFH  + VP ++++N+E  L +AF P GISDWNSIFW+ HPGG AI+D+VE          +A+R VLSEYGN++SACVLFILDE+R KS
Sbjct:  206 FRGPSLEQDDNLLAQCLFGDGSAAMIVGTDPRPDLETPLFELVSSAQTIVPNTDSHLKLTLREMGLTFHCSRAVPSVLAENVEDCLVKAFEPYGISDWNSIFWVFHPGGNAIVDRVEERLGLGAQRFRASRDVLSEYGNLTSACVLFILDEVRNKS 361          
BLAST of DN620781 vs. ExPASy Swiss-Prot
Match: CHSY_FRAAN (Chalcone synthase RJ5 (Fragment) OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.872e-36
Identity = 72/96 (75.00%), Postives = 79/96 (82.29%), Query Frame = -2
Query:  164 ISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 451
            I+DWNS+FWIAHPGGPAILDQVE          +ATR +LSEYGNMSSACVLFILDE+R+KS      TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:    2 ITDWNSLFWIAHPGGPAILDQVEAKLALKPEKLEATRHILSEYGNMSSACVLFILDEVRRKSAANGHKTTGEGLEWGVLFGFGPGLTVETVVLHSV 97          
BLAST of DN620781 vs. ExPASy Swiss-Prot
Match: CHSC_IPOPU (Chalcone synthase C (Fragment) OS=Ipomoea purpurea GN=CHSC PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.387e-35
Identity = 76/147 (51.70%), Postives = 96/147 (65.31%), Query Frame = -2
Query:  293 FRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSACVLF 733
            FRGP+    D+L+ Q LF           +P   +E PL++LVS +QT +PD+D  +   LRE+GLTFH  K VP LI++NIE  L +AF P GISDWNSIFWI HPGG AILD VE          +A+R VLS+YGN++SACVLF
Sbjct:  204 FRGPSLQQEDNLLAQCLFGDGSAAVIVGTEPRPGLETPLFELVSAAQTTIPDTDSYLKLQLREMGLTFHCSKAVPSLITQNIEDCLVKAFEPFGISDWNSIFWILHPGGNAILDGVEEKLGLEPEKLRASRDVLSQYGNLTSACVLF 350          
BLAST of DN620781 vs. ExPASy Swiss-Prot
Match: CHSA_IPONI (Chalcone synthase A (Fragment) OS=Ipomoea nil GN=CHSA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.956e-33
Identity = 73/144 (50.69%), Postives = 93/144 (64.58%), Query Frame = -2
Query:  302 FRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVEFXXXXXXXXXKATRQVLSEYGNMSSAC 733
            FRGP+    D L+ Q LF           +P   +E PL++LVS +QT +PD+D  +  HLRE+GLTFH  K VP LI++N+E  L +AF P GISDWNSIFWI HPGG AILD+VE          +A+R VLSE GN++SAC
Sbjct:  201 FRGPSLEQEDYLLAQCLFGDGSAAVIVGTEPRPGLETPLFELVSAAQTTIPDTDSHLKLHLREMGLTFHCSKAVPSLITQNVEDYLVKAFEPFGISDWNSIFWILHPGGIAILDRVEEKLGLEPEKLRASRDVLSESGNLTSAC 344          
The following BLAST results are available for this feature:
BLAST of DN620781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHSB_IPOCO3.052e-3850.31Chalcone synthase B (Fragment) OS=Ipomoea cordatot... [more]
CHSB_IPOTR1.514e-3750.64Chalcone synthase B (Fragment) OS=Ipomoea triloba ... [more]
CHSY_FRAAN4.872e-3675.00Chalcone synthase RJ5 (Fragment) OS=Fragaria anana... [more]
CHSC_IPOPU5.387e-3551.70Chalcone synthase C (Fragment) OS=Ipomoea purpurea... [more]
CHSA_IPONI2.956e-3350.69Chalcone synthase A (Fragment) OS=Ipomoea nil GN=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_05M23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0005M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620781 ID=DN620781; Name=DN620781; organism=Citrus sinensis; type=EST; length=740bp
TTTTTTTTTTTTTTTTTAAGAGAAAAGGCACGATGCCTTAAACTCAATTG
ACAAAACTAAACCTTCACACGATCAACCAATAACTCAACTGTGAAAGCAT
ACAACATAAAGTTACTGAACTACTAAACATACTGATGGAGTTCTCACTTC
AAGCTTTGATGGGGACACTGTGCAGCACAACGGTCTCGACGGTGAGCCCC
GGCCCGAACCCGAACAGCACACCCCAATCAAGCCCTTCGCCGGTGGTGGC
TTTCGCTTCCTCAACAGACTTCTTTCTCATCTCGTCAAGGATGAACAAGA
CACAAGCGCTTGACATGTTACCGTACTCACTCAACACTTGACGTGTGGCC
TTCAGCTTCTCCCCTTTGAGGCCCAGTTTAAACTCCACTTGGTCCAGAAT
TGCGGGCCCACCGGGGTGAGCGATCCAAAATATCGAGTTCCAGTCGCTGA
TGCCAAGCGGGGCGAACGCTTCAGACAGGCTTTTCTCTATATTCTTTGAG
ATCAAGCCGGGGACGTCTTTAAGCAAATGGAAAGTGAGACCGACTTCGCG
CAAGTGTCCGTCAATTGCACCGTCAGAGTCAGGGAGGATCGTCTGCGAAG
TCGACACGAGCTGATACAACGGACGCTCGACCGACGTGTCAGGATCGGCA
CCCACGATCACAGCAGCAGCACCATCACCGAACAAAGCCTGGCCCACAAG
AGAATCAAGATGAGTATCGGCAGGGCCGCGGAAAGTGACT
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