EG358250

Overview
NameEG358250
Unique NameEG358250
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length298
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS6_IPOBA (Chalcone synthase DII OS=Ipomoea batatas GN=CHS-DII PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.854e-26
Identity = 56/70 (80.00%), Postives = 61/70 (87.14%), Query Frame = 2
Query:   89 MVTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            MVT  E RKAQR +GPATI+ IGTATP NCV+QSTYPDYYFRITNSE  T+LKEKF+RMCDKSMI KRYM
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTATPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYM 70          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS7_PICMA (Chalcone synthase 7 OS=Picea mariana GN=CSF7 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.727e-26
Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = 2
Query:   89 MVTDYE-FRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            ++ D E FRKAQR  GPATI+ IGTATPPN VDQSTYPDYYF+ITNSE MT+LKEKF+RMCDKS IKKRYM
Sbjct:    5 LMADLEAFRKAQRADGPATILAIGTATPPNAVDQSTYPDYYFKITNSEHMTELKEKFQRMCDKSAIKKRYM 75          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS3_IPOBA (Chalcone synthase LF3 OS=Ipomoea batatas GN=CHS-LF3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.727e-26
Identity = 56/70 (80.00%), Postives = 61/70 (87.14%), Query Frame = 2
Query:   89 MVTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            MVT  E RKAQR +GPATI+ IGTATP NCV+QSTYPDYYFRITNSE  T+LKEKF+RMCDKSMI KRYM
Sbjct:    1 MVTVGEVRKAQRAEGPATILAIGTATPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYM 70          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHSY_PINSY (Chalcone synthase OS=Pinus sylvestris GN=CHS PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.867e-26
Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = 2
Query:   89 MVTDYE-FRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            M+ D E FRKAQR  GPATI+ IGTATPPN VDQS+YPDYYF+ITNSE MT+LKEKF+RMCDKS IKKRYM
Sbjct:    5 MMKDLEAFRKAQRADGPATILAIGTATPPNAVDQSSYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYM 75          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS8_IPOBA (Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DIV PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.303e-26
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 2
Query:   89 MVTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            MVT  E RKAQR +GPATI+ IGT TP NCV+QSTYPDYYFRITNSE  T+LKEKF+RMCDKSMI KRYM
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYM 70          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS7_IPOBA (Chalcone synthase DIII OS=Ipomoea batatas GN=CHS-DIII PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.303e-26
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 2
Query:   89 MVTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            MVT  E RKA+R +GPATI+ IGTATP NCV+QSTYPDYYFRITNSE  T+LKEKF+RMCDKSMI KRYM
Sbjct:    1 MVTVEEVRKAKRAEGPATILAIGTATPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYM 70          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS2_IPOBA (Chalcone synthase LF2 OS=Ipomoea batatas GN=CHS-LF2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.303e-26
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 2
Query:   89 MVTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            MVT  E RKAQR +GPATI+ IGT TP NCV+QSTYPDYYFRITNSE  T+LKEKF+RMCDKSMI KRYM
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYM 70          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS1_IPOBA (Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.303e-26
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 2
Query:   89 MVTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            MVT  E RKAQR +GPATI+ IGT TP NCV+QSTYPDYYFRITNSE  T+LKEKF+RMCDKSMI KRYM
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYM 70          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHSA_PEA (Chalcone synthase 1A OS=Pisum sativum GN=CHS-1A PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.416e-25
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 2
Query:   89 MVTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            MVT  E R+AQR +GPAT+  IGTATP NCV+QSTYPD+YFRITNS+  T+LKEKF+RMCDKSMIKKRYM
Sbjct:    1 MVTVNEIRQAQRAEGPATVFAIGTATPQNCVEQSTYPDFYFRITNSQHKTELKEKFQRMCDKSMIKKRYM 70          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS4_IPOBA (Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF4 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.850e-25
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 2
Query:   89 MVTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            MVT  E RKAQR +GPATI+ IGT TP NCV+QSTYPDYYFRITNSE  T+LKE+F+RMCDKSMI KRYM
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKERFQRMCDKSMITKRYM 70          
The following BLAST results are available for this feature:
BLAST of EG358250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHS6_IPOBA2.854e-2680.00Chalcone synthase DII OS=Ipomoea batatas GN=CHS-DI... [more]
CHS7_PICMA3.727e-2678.87Chalcone synthase 7 OS=Picea mariana GN=CSF7 PE=2 ... [more]
CHS3_IPOBA3.727e-2680.00Chalcone synthase LF3 OS=Ipomoea batatas GN=CHS-LF... [more]
CHSY_PINSY4.867e-2678.87Chalcone synthase OS=Pinus sylvestris GN=CHS PE=3 ... [more]
CHS8_IPOBA8.303e-2678.57Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DI... [more]
CHS7_IPOBA8.303e-2678.57Chalcone synthase DIII OS=Ipomoea batatas GN=CHS-D... [more]
CHS2_IPOBA8.303e-2678.57Chalcone synthase LF2 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS1_IPOBA8.303e-2678.57Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF... [more]
CHSA_PEA1.416e-2575.71Chalcone synthase 1A OS=Pisum sativum GN=CHS-1A PE... [more]
CHS4_IPOBA1.850e-2577.14Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF... [more]

Pages

back to top
Properties
Property NameValue
Genbank description10g2 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0010g2, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358250 ID=EG358250; Name=EG358250; organism=Citrus sinensis; type=EST; length=298bp
CCGGGCAGGTACCCGGGGATACAAATTTATAAAACATCAGAAGAGCTAGA
TAGGTCTCCGGGAACCGATCGATTGGAAACAACAAACAATGGTGACCGAC
TATGAATTTCGGAAGGCTCAACGGGACCAAGGTCCGGCCACGATCATGGA
CATTGGAACGGCAACTCCACCGAATTGTGTTGATCAAAGCACGTATCCGG
ATTATTATTTTCGCATCACAAATAGTGAACAGATGACTGATCTTAAAGAG
AAATTCAAGCGCATGTGTGACAAATCCATGATCAAGAAGCGATACATG
back to top