EG358250

Overview
NameEG358250
Unique NameEG358250
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length298
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS9_DAUCA (Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.416e-25
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 2
Query:   89 MVTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            MVT  EFRKAQR +GPAT++ IGTATPPNCVDQS Y DYYFRITNSE   +LKEKF+RMC+KSMI  RYM
Sbjct:    1 MVTVNEFRKAQRAEGPATVLAIGTATPPNCVDQSAYADYYFRITNSEDKPELKEKFRRMCEKSMINTRYM 70          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS7_SOYBN (Chalcone synthase 7 OS=Glycine max GN=CHS7 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.416e-25
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 2
Query:   89 MVTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            MV+  E R+AQR +GPATI+ IGTA PPN VDQSTYPDYYFRITNS+ MT+LKEKF+RMCDKSMIK RYM
Sbjct:    1 MVSVAEIRQAQRAEGPATILAIGTANPPNRVDQSTYPDYYFRITNSDHMTELKEKFQRMCDKSMIKTRYM 70          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS1_DAUCA (Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.416e-25
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 2
Query:   89 MVTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            MVT  EFRKAQR +GPAT++ IGTATPPNCVDQS Y DYYFRITNSE   +LKEKF+RMC+KSMI  RYM
Sbjct:    1 MVTVNEFRKAQRAEGPATVLAIGTATPPNCVDQSAYADYYFRITNSEDKPELKEKFRRMCEKSMINTRYM 70          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHSY_VITVI (Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.121e-25
Identity = 53/70 (75.71%), Postives = 60/70 (85.71%), Query Frame = 2
Query:   89 MVTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            MV+  E RKAQR +GPAT++ IGTATP NCV Q+ YPDYYFRITNSE MT+LKEKFKRMC+KSMI KRYM
Sbjct:    1 MVSVAEIRKAQRAEGPATVLAIGTATPANCVYQADYPDYYFRITNSEHMTELKEKFKRMCEKSMINKRYM 70          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS6_PEA (Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.382e-25
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 2
Query:   89 MVTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            MV+  E RKAQR +GPATI+ IGTATP NCV+QSTYPD+YF+ITNSE  T LKEKF+RMCDKSMIK+RYM
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTATPANCVEQSTYPDFYFKITNSEHKTVLKEKFQRMCDKSMIKRRYM 70          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS4_MEDSA (Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.382e-25
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 2
Query:   89 MVTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            MV+  E RKAQR +GPATI+ IGTA P NCV+QSTYPD+YF+ITNSE  T+LKEKF+RMCDKSMIK+RYM
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYM 70          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS2_MEDSA (Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.382e-25
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 2
Query:   89 MVTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            MV+  E RKAQR +GPATI+ IGTA P NCV+QSTYPD+YF+ITNSE  T+LKEKF+RMCDKSMIK+RYM
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYM 70          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS2_PEA (Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.029e-25
Identity = 53/70 (75.71%), Postives = 60/70 (85.71%), Query Frame = 2
Query:   89 MVTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            MVT  E RKAQR +GPATI+ IGTA P NCV+QSTYPD+YF+ITNSE  T LKEKF+RMCDKSMIK+RYM
Sbjct:    1 MVTVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTVLKEKFQRMCDKSMIKRRYM 70          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS7_SORBI (Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.199e-24
Identity = 53/69 (76.81%), Postives = 57/69 (82.61%), Query Frame = 2
Query:   92 VTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            VT  E RKAQR  GPAT++ IGTATP NCV Q+ YPDYYFRIT SE MTDLKEKFKRMCDKS I+KRYM
Sbjct:    6 VTVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTDLKEKFKRMCDKSQIRKRYM 74          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS3_SORBI (Chalcone synthase 3 OS=Sorghum bicolor GN=CHS3 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.199e-24
Identity = 53/69 (76.81%), Postives = 57/69 (82.61%), Query Frame = 2
Query:   92 VTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            VT  E RKAQR  GPAT++ IGTATP NCV Q+ YPDYYFRIT SE MTDLKEKFKRMCDKS I+KRYM
Sbjct:    6 VTVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTDLKEKFKRMCDKSQIRKRYM 74          
The following BLAST results are available for this feature:
BLAST of EG358250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHS9_DAUCA2.416e-2575.71Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 ... [more]
CHS7_SOYBN2.416e-2577.14Chalcone synthase 7 OS=Glycine max GN=CHS7 PE=3 SV... [more]
CHS1_DAUCA2.416e-2575.71Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 ... [more]
CHSY_VITVI4.121e-2575.71Chalcone synthase OS=Vitis vinifera GN=CHS PE=2 SV... [more]
CHS6_PEA5.382e-2575.71Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 ... [more]
CHS4_MEDSA5.382e-2574.29Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=... [more]
CHS2_MEDSA5.382e-2574.29Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=... [more]
CHS2_PEA7.029e-2575.71Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 ... [more]
CHS7_SORBI1.199e-2476.81Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=... [more]
CHS3_SORBI1.199e-2476.81Chalcone synthase 3 OS=Sorghum bicolor GN=CHS3 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank description10g2 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0010g2, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358250 ID=EG358250; Name=EG358250; organism=Citrus sinensis; type=EST; length=298bp
CCGGGCAGGTACCCGGGGATACAAATTTATAAAACATCAGAAGAGCTAGA
TAGGTCTCCGGGAACCGATCGATTGGAAACAACAAACAATGGTGACCGAC
TATGAATTTCGGAAGGCTCAACGGGACCAAGGTCCGGCCACGATCATGGA
CATTGGAACGGCAACTCCACCGAATTGTGTTGATCAAAGCACGTATCCGG
ATTATTATTTTCGCATCACAAATAGTGAACAGATGACTGATCTTAAAGAG
AAATTCAAGCGCATGTGTGACAAATCCATGATCAAGAAGCGATACATG
back to top