EG358250

Overview
NameEG358250
Unique NameEG358250
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length298
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS1_MAIZE (Chalcone synthase WHP1 OS=Zea mays GN=WHP1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.015e-23
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 2
Query:   92 VTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            VT  E RK QR  GPAT++ IGTATP NCV Q+ YPDYYFRIT S+ +TDLKEKFKRMCDKSMI+KRYM
Sbjct:    6 VTVDEVRKGQRATGPATVLAIGTATPANCVYQADYPDYYFRITKSDHLTDLKEKFKRMCDKSMIRKRYM 74          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHSY_CHRAE (Chalcone synthase OS=Chrysosplenium americanum GN=CHS PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.731e-23
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 2
Query:  104 EFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            E R AQR +GPATI+ IGTATP NCV Q+ YPD+YFRITNSE  T+LKEKF+RMCDKSMIKKRYM
Sbjct:    9 EIRNAQRAEGPATILAIGTATPANCVIQADYPDFYFRITNSEHKTELKEKFQRMCDKSMIKKRYM 73          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS3_GERHY (Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.731e-23
Identity = 52/70 (74.29%), Postives = 58/70 (82.86%), Query Frame = 2
Query:   92 VTDYE-FRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            V D E  RKAQR +GPATI+ IGTATP NCV Q+ YPDYYFR+T SE M DLKEKF+RMCDKSMI+KRYM
Sbjct:    7 VIDVETIRKAQRAEGPATILAIGTATPANCVYQADYPDYYFRVTESEHMVDLKEKFQRMCDKSMIRKRYM 76          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.731e-23
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 2
Query:   89 MVTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            M T  E R AQR  GPAT++ IGTATP + V+Q+ YPDYYFRIT SE MT+LKEKFKRMCDKSMIKKRYM
Sbjct:    1 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYM 70          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSJ (Chalcone synthase OS=Oryza sativa subsp. japonica GN=CHS PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.261e-23
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 2
Query:   92 VTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            VT  E R+AQR +GPAT++ IGTATP NCV Q+ YPDYYFRIT SE M +LKEKFKRMCDKS I+KRYM
Sbjct:    5 VTVEEVRRAQRAEGPATVLAIGTATPANCVYQADYPDYYFRITKSEHMVELKEKFKRMCDKSQIRKRYM 73          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSI (Chalcone synthase OS=Oryza sativa subsp. indica GN=CHS PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.261e-23
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 2
Query:   92 VTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            VT  E R+AQR +GPAT++ IGTATP NCV Q+ YPDYYFRIT SE M +LKEKFKRMCDKS I+KRYM
Sbjct:    5 VTVEEVRRAQRAEGPATVLAIGTATPANCVYQADYPDYYFRITKSEHMVELKEKFKRMCDKSQIRKRYM 73          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS1_TRISU (Chalcone synthase 1 OS=Trifolium subterraneum GN=CHS1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.261e-23
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 2
Query:   89 MVTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            MV+  E RKAQR +GPATI+ IGTA PPN V+Q+TYPD+YF+ITNSE   +LKEKF+RMCDKSMIK RYM
Sbjct:    1 MVSVAEIRKAQRAEGPATILAIGTANPPNRVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYM 70          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS1_GERHY (Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.953e-23
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 2
Query:  110 RKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            R AQR +GPATI+ IGTATP NCV Q+ YPDYYFRIT SE M DLKEKFKRMCDKSMI+KRYM
Sbjct:   11 RDAQRAEGPATILAIGTATPANCVYQADYPDYYFRITKSEHMVDLKEKFKRMCDKSMIRKRYM 73          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS2_SECCE (Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.857e-23
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 2
Query:   92 VTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            +T  E RKAQR +GPAT++ IGTATP NCV Q+ YPDYYF+IT S+ M DLKEKFKRMCDKS I+KRYM
Sbjct:    5 MTVEEVRKAQRAEGPATVLAIGTATPANCVYQADYPDYYFKITKSDHMADLKEKFKRMCDKSQIRKRYM 73          
BLAST of EG358250 vs. ExPASy Swiss-Prot
Match: CHS2_RUTGR (Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.857e-23
Identity = 51/69 (73.91%), Postives = 56/69 (81.16%), Query Frame = 2
Query:   92 VTDYEFRKAQRDQGPATIMDIGTATPPNCVDQSTYPDYYFRITNSEQMTDLKEKFKRMCDKSMIKKRYM 298
            VT  E RKAQR  GPA ++ IGTATP N V Q+ YPDYYFRIT SE MT+LKEKFKRMCDKSMI+KRYM
Sbjct:    4 VTVEEIRKAQRADGPAAVLAIGTATPANYVTQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIRKRYM 72          
The following BLAST results are available for this feature:
BLAST of EG358250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CHS1_MAIZE1.015e-2373.91Chalcone synthase WHP1 OS=Zea mays GN=WHP1 PE=3 SV... [more]
CHSY_CHRAE1.731e-2376.92Chalcone synthase OS=Chrysosplenium americanum GN=... [more]
CHS3_GERHY1.731e-2374.29Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=... [more]
CHS2_CITSI1.731e-2372.86Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=... [more]
CHSY_ORYSJ2.261e-2372.46Chalcone synthase OS=Oryza sativa subsp. japonica ... [more]
CHSY_ORYSI2.261e-2372.46Chalcone synthase OS=Oryza sativa subsp. indica GN... [more]
CHS1_TRISU2.261e-2371.43Chalcone synthase 1 OS=Trifolium subterraneum GN=C... [more]
CHS1_GERHY2.953e-2379.37Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=... [more]
CHS2_SECCE3.857e-2371.01Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2... [more]
CHS2_RUTGR3.857e-2373.91Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=... [more]

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Properties
Property NameValue
Genbank description10g2 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0010g2, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358250 ID=EG358250; Name=EG358250; organism=Citrus sinensis; type=EST; length=298bp
CCGGGCAGGTACCCGGGGATACAAATTTATAAAACATCAGAAGAGCTAGA
TAGGTCTCCGGGAACCGATCGATTGGAAACAACAAACAATGGTGACCGAC
TATGAATTTCGGAAGGCTCAACGGGACCAAGGTCCGGCCACGATCATGGA
CATTGGAACGGCAACTCCACCGAATTGTGTTGATCAAAGCACGTATCCGG
ATTATTATTTTCGCATCACAAATAGTGAACAGATGACTGATCTTAAAGAG
AAATTCAAGCGCATGTGTGACAAATCCATGATCAAGAAGCGATACATG
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