EG358241

Overview
NameEG358241
Unique NameEG358241
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358241 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.081e-12
Identity = 57/234 (24.36%), Postives = 92/234 (39.32%), Query Frame = 2
Query:   71 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEAT---------SEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILHI 745
            VP ID+  + S D     +    + +A    G   +VNHGI  +L     R   AFF  P+ EK++       G+  GY S      + +L W++       P D       P    DY  AT           YAR    ++   L +                         M++NYYP C +P   LG   H D ++LT +  + V GLQ+  + +W + +   ++ +++I
Sbjct:   39 VPLIDIGGMLSGDPRATAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDAFFTMPLPEKQRALRRP--GESCGYASSFTGRFASKLPWKETLSFRSCPSD-------PALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPMETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNI 263          
BLAST of EG358241 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.329e-12
Identity = 54/225 (24.00%), Postives = 94/225 (41.78%), Query Frame = 2
Query:   71 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILHI 745
            +PTIDL  +  E  V RE    ++K A   +G    +NHG+  D+ E++    + F DQ  E ++ +     + K++ Y S      S    W D    ++ P+  +   +    P    E   EY++++  LA  +  +                         M  + +P CP+P    G   HTD S LT +L++   GLQ+ Y   W+     P ++I ++
Sbjct:   55 IPTIDLGGV-FESTVVRESVVAKVKDAMEKFGFFQAINHGVPLDVMEKMINGIRRFHDQDPEVRKMFYTRDKTKKLK-YHSNADLYESPAASWRDTLSCVMAPDVPKAQDL----PEVCGEIMLEYSKEVMKLAELMFEILSEALGLSPNHLKEMDCAKGLW---MLCHCFPPCPEPNRTFGGAQHTDRSFLTILLNDNNGGLQVLYDGYWIDVPPNPEALIFNV 270          
BLAST of EG358241 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.091e-12
Identity = 50/205 (24.39%), Postives = 87/205 (42.44%), Query Frame = 2
Query:  140 LKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQM--KINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYKDKWVTAKCVPNSIILHI 745
            L+ A  +WG   L+NHGIS +  E+ +   +  + +      +   ++ + K    G  +  +    L+WE  FF    P    ++S  P    D      E+A  L  LA ++L +                            K++ YP CP+PEL  G+ AHTD   +  +   + V GLQL   ++W+    + +SI+++I
Sbjct:   16 LRDACENWGFFELLNHGISHEPNEQSETVNKEHYREHYRRFREQRFKEFAAKTLDSGENVDGD---NLDWESTFFLRHLPTS--NISQVPDLDEDCGSTMKEFALGLEKLAERLLDLLCENLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDTVSGLQLLKDEEWIDVPPMRHSIVVNI 215          
BLAST of EG358241 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.187e-11
Identity = 56/234 (23.93%), Postives = 91/234 (38.89%), Query Frame = 2
Query:   71 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEAT---------SEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILHI 745
            VP ID+  + S D     +    + +A    G   +VNHGI  +L     R    FF  P+ EK++       G+  GY S      + +L W++       P D       P    DY  AT           YAR    ++   L +                         M++NYYP C +P   LG   H D ++LT +  + V GLQ+  + +W + +   ++ +++I
Sbjct:   39 VPLIDIGGMLSGDPAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRHP--GESCGYASSFTGRFASKLPWKETLSFRSCPSD-------PALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNI 263          
BLAST of EG358241 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.454e-11
Identity = 55/234 (23.50%), Postives = 91/234 (38.89%), Query Frame = 2
Query:   71 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEAT---------SEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILHI 745
            VP I++  + S D     +    + +A    G   +VNHGI  +L     R    FF  P+ EK++       G+  GY S      + +L W++       P D       P    DY  AT           YAR    ++   L +                         M++NYYP C +P   LG   H D ++LT +  + V GLQ+  + +W + +   ++ +++I
Sbjct:   39 VPLINIGGMLSGDAAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRRP--GESCGYASSFTGRFASKLPWKETLSFRSCPSD-------PALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNI 263          
The following BLAST results are available for this feature:
BLAST of EG358241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
GAO1B_WHEAT4.081e-1224.36Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
GSL_ARATH5.329e-1224.00Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
ACCO_DENCR9.091e-1224.391-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
GAO1D_WHEAT1.187e-1123.93Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
GAO1A_WHEAT3.454e-1123.50Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]

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Properties
Property NameValue
Genbank description3f12 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl003f12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358241 ID=EG358241; Name=EG358241; organism=Citrus sinensis; type=EST; length=780bp
ACGACCAAAGGAAGAGCTAATGAGCATTGGCAATATTTTTGAAGAAGAGG
AAAAAGATGAAGGGCCTCAAGTTCCCACAATTGATCTCAAGGAAATTGAC
TCTGAGGACAGAGTTGAACGCGAGAAATGTCGCGAGGAGCTCAAGAAAGC
TGCCATGGATTGGGGTGTTATGCACCTTGTTAACCATGGGATTTCGGATG
ATCTCACTGAACGCGTCAAGAGAGCCGGTCAGGCCTTTTTCGATCAGCCG
GTTGAGGAGAAAGAGAAGTATGCCAATGAGCAGGCTTCGGGAAAGATTCA
GGGTTACGGAAGCAAGCTAGCTAATAATGCTAGTGGCCAGCTTGAGTGGG
AGGACTATTTCTTCCACCTTATTTATCCTGAAGATAAAAGGGATATGTCC
ATTTGGCCTAAGACTCCAAGCGACTATACAGAGGCTACCAGTGAATACGC
AAGGCAACTGAGAAGCCTAGCGACGAAAATTCTGGCAGTGTTGTCACTTG
GCTTGGGACTGGAAGAGGGGAGGCTGGAAAAGGAAGTTGGTGGCCTAGAA
GAGCTCCTTCTTCAGATGAAGATCAATTACTATCCCAAATGCCCTCAACC
AGAACTGGCTCTTGGTGTTGAAGCTCACACAGATGTGAGTGCACTCACTT
TCATTCTTCACAACATGGTTCCGGGCCTGCAGCTCTTCTACAAAGACAAA
TGGGTGACTGCTAAATGTGTTCCAAATTCNATCATCTTGCACATTTGGTG
ACACCATTGNAAATTCTGAGCAATGGCGAG
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