FC922038

Overview
NameFC922038
Unique NameFC922038
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_HERA2 (Adenine phosphoribosyltransferase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=apt PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.340e-11
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 180
            QAG+R ++VDDL+ATGGT+ AA  LL ++G  VVE A +IEL  L GRE+LG +P +  +
Sbjct:  111 QAGDRVVVVDDLLATGGTVVAACDLLNQLGAEVVEAAFLIELTFLGGREKLGNRPFYAQI 170          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_GERCA (Adenine phosphoribosyltransferase OS=Gerbillus campestris GN=APRT PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.340e-11
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 180
            + G++ +IVDDL+ATGGT+ AA +LL ++   VVEC  ++EL  LKGRE+LG  P F L+
Sbjct:  118 EPGQKVVIVDDLLATGGTMCAACQLLGQLRAEVVECVSLVELTSLKGREKLGPVPFFSLL 177          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_STRGC (Adenine phosphoribosyltransferase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=apt PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.669e-11
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    7 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 180
            G+R LIVDDL+ATGGT+ A I ++ER+G  V  CA +IEL ELKGRE +GE    VL+
Sbjct:  111 GQRVLIVDDLLATGGTVKATIEMIERLGGIVAGCAFLIELDELKGREVIGEYDYKVLM 168          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_DINSH (Adenine phosphoribosyltransferase OS=Dinoroseobacter shibae (strain DFL 12) GN=apt PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.669e-11
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFV 174
            Q GER L+VDDL+ATGGT  A I+L+ER+G  VV CA +I+LP+L GR+ L E  + V
Sbjct:  113 QPGERVLLVDDLLATGGTARAGIQLIERLGAEVVGCAFLIDLPDLGGRKLLEEMDMGV 170          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_CRIGR (Adenine phosphoribosyltransferase OS=Cricetulus griseus GN=APRT PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.669e-11
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 180
            + G++ ++VDDL+ATGGT+ AA  LL ++   VVEC  ++EL  LKGRE+LG  P F L+
Sbjct:  118 EPGQKVVVVDDLLATGGTMCAACELLGQLQAEVVECVSLVELTSLKGREKLGSVPFFSLL 177          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_HUMAN (Adenine phosphoribosyltransferase OS=Homo sapiens GN=APRT PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.404e-11
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 180
            + G+R ++VDDL+ATGGT++AA  LL R+   V+EC  ++EL  LKGRE+L   P F L+
Sbjct:  118 EPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLKGREKLAPVPFFSLL 177          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_ACIAC (Adenine phosphoribosyltransferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=apt PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.404e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    7 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEK--PLFVLV 180
            G+R L++DDL+ATGGT+ A  RLLER+G  V E A +++LPEL G  RL E   PL+ LV
Sbjct:  120 GDRVLLIDDLIATGGTMMAGRRLLERLGATVTEGAAIVDLPELGGSSRLRESGLPLYTLV 179          
The following BLAST results are available for this feature:
BLAST of FC922038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
APT_HERA24.340e-1153.33Adenine phosphoribosyltransferase OS=Herpetosiphon... [more]
APT_GERCA4.340e-1151.67Adenine phosphoribosyltransferase OS=Gerbillus cam... [more]
APT_STRGC5.669e-1158.62Adenine phosphoribosyltransferase OS=Streptococcus... [more]
APT_DINSH5.669e-1156.90Adenine phosphoribosyltransferase OS=Dinoroseobact... [more]
APT_CRIGR5.669e-1150.00Adenine phosphoribosyltransferase OS=Cricetulus gr... [more]
APT_HUMAN7.404e-1150.00Adenine phosphoribosyltransferase OS=Homo sapiens ... [more]
APT_ACIAC7.404e-1155.00Adenine phosphoribosyltransferase OS=Acidovorax av... [more]

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Properties
Property NameValue
Genbank descriptionC06056H01T7 RindPdigS Citrus sinensis cDNA clone C06056H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922038 ID=FC922038; Name=FC922038; organism=Citrus sinensis; type=EST; length=343bp
CAAGCAGGGGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAACTGGTGG
GACCTTGTCTGCTGCAATCAGGCTACTTGAGCGAGTTGGGGTGCATGTGG
TTGAGTGTGCATGCGTGATTGAACTGCCAGAGCTAAAGGGTCGGGAACGG
CTGGGAGAGAAACCACTATTTGTTCTTGTAAGCTAAACTTGATCTCAGTT
TATGGTTTAAATGCAATGTTTGTGGACCATATGGGTTTCTAGTCGCTCGG
GCTCTGCTCAAAGCTTGAGAACTTCATAAAACCATCTGATTAATATAAGA
GCAGTTTCATTGGCTTTTTAAAAAAAAAAAAAAAAAAAAAAAA
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