EG358230

Overview
NameEG358230
Unique NameEG358230
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358230 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12
Identity = 57/235 (24.26%), Postives = 92/235 (39.15%), Query Frame = 3
Query:   93 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEAT---------SEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILYLG 770
            VP ID+  + S D     +    + +A    G   +VNHGI  +L     R   AFF  P+ EK++       G+  GY S      + +L W++       P D       P    DY  AT           YAR    ++   L +                         M++NYYP C +P   LG   H D ++LT +  + V GLQ+  + +W + +   ++ ++ +G
Sbjct:   39 VPLIDIGGMLSGDPRATAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDAFFTMPLPEKQRALRRP--GESCGYASSFTGRFASKLPWKETLSFRSCPSD-------PALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPMETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIG 264          
BLAST of EG358230 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.109e-12
Identity = 55/226 (24.34%), Postives = 94/226 (41.59%), Query Frame = 3
Query:   93 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILYLG 770
            +PTIDL  +  E  V RE    ++K A   +G    +NHG+  D+ E++    + F DQ  E ++ +     + K++ Y S      S    W D    ++ P+  +   +    P    E   EY++++  LA  +  +                         M  + +P CP+P    G   HTD S LT +L++   GLQ+ Y   W+     P ++I  +G
Sbjct:   55 IPTIDLGGV-FESTVVRESVVAKVKDAMEKFGFFQAINHGVPLDVMEKMINGIRRFHDQDPEVRKMFYTRDKTKKLK-YHSNADLYESPAASWRDTLSCVMAPDVPKAQDL----PEVCGEIMLEYSKEVMKLAELMFEILSEALGLSPNHLKEMDCAKGLW---MLCHCFPPCPEPNRTFGGAQHTDRSFLTILLNDNNGGLQVLYDGYWIDVPPNPEALIFNVG 271          
BLAST of EG358230 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.009e-12
Identity = 50/206 (24.27%), Postives = 87/206 (42.23%), Query Frame = 3
Query:  162 LKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQM--KINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYKDKWVTAKCVPNSIILYLG 770
            L+ A  +WG   L+NHGIS +  E+ +   +  + +      +   ++ + K    G  +  +    L+WE  FF    P    ++S  P    D      E+A  L  LA ++L +                            K++ YP CP+PEL  G+ AHTD   +  +   + V GLQL   ++W+    + +SI++ +G
Sbjct:   16 LRDACENWGFFELLNHGISHEPNEQSETVNKEHYREHYRRFREQRFKEFAAKTLDSGENVDGD---NLDWESTFFLRHLPTS--NISQVPDLDEDCGSTMKEFALGLEKLAERLLDLLCENLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDTVSGLQLLKDEEWIDVPPMRHSIVVNIG 216          
BLAST of EG358230 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.154e-12
Identity = 56/235 (23.83%), Postives = 91/235 (38.72%), Query Frame = 3
Query:   93 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEAT---------SEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILYLG 770
            VP ID+  + S D     +    + +A    G   +VNHGI  +L     R    FF  P+ EK++       G+  GY S      + +L W++       P D       P    DY  AT           YAR    ++   L +                         M++NYYP C +P   LG   H D ++LT +  + V GLQ+  + +W + +   ++ ++ +G
Sbjct:   39 VPLIDIGGMLSGDPAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRHP--GESCGYASSFTGRFASKLPWKETLSFRSCPSD-------PALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIG 264          
BLAST of EG358230 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.663e-11
Identity = 55/235 (23.40%), Postives = 91/235 (38.72%), Query Frame = 3
Query:   93 VPTIDLKEIDSEDRVEREKCREELKKAAMDWGVMHLVNHGISDDLTERVKRAGQAFFDQPVEEKEKYANEQASGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEAT---------SEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILYLG 770
            VP I++  + S D     +    + +A    G   +VNHGI  +L     R    FF  P+ EK++       G+  GY S      + +L W++       P D       P    DY  AT           YAR    ++   L +                         M++NYYP C +P   LG   H D ++LT +  + V GLQ+  + +W + +   ++ ++ +G
Sbjct:   39 VPLINIGGMLSGDAAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRRP--GESCGYASSFTGRFASKLPWKETLSFRSCPSD-------PALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIG 264          
The following BLAST results are available for this feature:
BLAST of EG358230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
GAO1B_WHEAT3.146e-1224.26Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
GSL_ARATH4.109e-1224.34Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
ACCO_DENCR7.009e-1224.271-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
GAO1D_WHEAT9.154e-1223.83Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
GAO1A_WHEAT2.663e-1123.40Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]

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Properties
Property NameValue
Genbank description4c1 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0004c1, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358230 ID=EG358230; Name=EG358230; organism=Citrus sinensis; type=EST; length=782bp
TCGAGCGGCCGCCCGGGCAGGTACGACCAAAGGAAGAGCTAATGAGCATT
GGCAATATTTTTGAAGAAGAGGAAAAAGATGAAGGGCCTCAAGTTCCCAC
AATTGATCTCAAGGAAATTGACTCTGAGGACAGAGTTGAACGCGAGAAAT
GTCGCGAGGAGCTCAAGAAAGCTGCCATGGATTGGGGTGTTATGCACCTT
GTTAACCATGGGATTTCGGATGATCTCACTGAACGCGTCAAGAGAGCCGG
TCAGGCCTTTTTCGATCAGCCGGTTGAGGAGAAAGAGAAGTATGCCAATG
AGCAGGCTTCGGGAAAGATTCAGGGTTACGGAAGCAAGCTAGCTAATAAT
GCTAGTGGCCAGCTTGAGTGGGAGGACTATTTCTTCCACCTTATTTATCC
TGAAGATAAAAGGGATATGTCCATTTGGCCTAAGACTCCAAGCGACTATA
CAGAGGCTACCAGTGAATACGCAAGGCAACTGAGAAGCCTAGCGACGAAA
ATTCTGGCAGTGTTGTCACTTGGCTTGGGACTGGAAGAGGGGAGGTTGGA
AAAGGAAGTTGGTGGCCTAGAAGAGCTCCTTCTTCAGATGAAGATCAATT
ACTATCCCAAATGCCCTCAACCAGAACTGGCTCTTGGTGTTGAAGCTCAC
ACAGATGTGAGTGCACTCACTTTCATTCTTCACAACATGGTTCCGGGCCT
GCAGCTCTTCTACAAAGACAAATGGGTGACTGCTAAATGTGTTCCAAATT
CGATCATCTTGTACCTCGGCCGCGACCACGCT
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