EY720866

Overview
NameEY720866
Unique NameEY720866
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: RHLB_XANCP (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. campestris GN=rhlB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.095e-15
Identity = 53/162 (32.72%), Postives = 82/162 (50.62%), Query Frame = 2
Query:  167 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV-------DTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLWVLDESDEM 628
            +F +  +   L+ G+   GF + + IQ   +   + G DV  QAQ+GTGKT    + V   +       D    + +ALIL+PTRELA Q  K  +  G  + ++     GG    +    L+ GV V+  TPGR+ D +K+ K +   A ++ VLDE+D M
Sbjct:   10 TFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRM 171          
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: RHLB_XANCB (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. campestris (strain B100) GN=rhlB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.095e-15
Identity = 53/162 (32.72%), Postives = 82/162 (50.62%), Query Frame = 2
Query:  167 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV-------DTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLWVLDESDEM 628
            +F +  +   L+ G+   GF + + IQ   +   + G DV  QAQ+GTGKT    + V   +       D    + +ALIL+PTRELA Q  K  +  G  + ++     GG    +    L+ GV V+  TPGR+ D +K+ K +   A ++ VLDE+D M
Sbjct:   10 TFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRM 171          
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: RHLB_XANC8 (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rhlB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.095e-15
Identity = 53/162 (32.72%), Postives = 82/162 (50.62%), Query Frame = 2
Query:  167 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV-------DTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLWVLDESDEM 628
            +F +  +   L+ G+   GF + + IQ   +   + G DV  QAQ+GTGKT    + V   +       D    + +ALIL+PTRELA Q  K  +  G  + ++     GG    +    L+ GV V+  TPGR+ D +K+ K +   A ++ VLDE+D M
Sbjct:   10 TFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRM 171          
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: RHLB_VIBSL (ATP-dependent RNA helicase rhlB OS=Vibrio splendidus (strain LGP32) GN=rhlB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.095e-15
Identity = 51/160 (31.87%), Postives = 85/160 (53.12%), Query Frame = 2
Query:  170 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKT-SMIALTVCQTVDTSSRE------VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLWVLDESDEM 628
            F  + +   ++ G+ + GF+  + IQ  A+  ++ G+D+  QAQ+GTGKT + +  T    + T   E       +A+I++PTRELA Q      ++     I+A    GG+S  + + K+E G  ++ GT GR+ D  K+K      I+  VLDE+D M
Sbjct:   11 FADLDLLPQVIEGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLKTPEHEGRKPNQPRAIIMAPTRELAIQIYNDADSLVASTGIKAALAYGGESYDKQLGKIEEGADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRM 170          
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: RHLB_ALISL (ATP-dependent RNA helicase rhlB OS=Aliivibrio salmonicida (strain LFI1238) GN=rhlB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.095e-15
Identity = 55/164 (33.54%), Postives = 93/164 (56.71%), Query Frame = 2
Query:  170 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKT-SMIALTVCQTVDTSSRE------VQALILSPTRELATQ----TEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLWVLDESDEM 628
            F  +G++  +L G+   GF   + IQ +A+  ++ G+D+  QAQ+GTGKT + +A T    + T + E       +A+I++PTRELA Q     E +I + G    ++A    GG+   +  + +E GV ++ GT GR+ D  K+  +  +AI++ VLDE+D M
Sbjct:   11 FADLGLEPQVLDGLNAKGFINCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLAATFNHLLTTPAPEGRKITQPRAIIMAPTRELAIQIYNDAESLIASTG----LKAALAYGGERYEKQQKVIEAGVDILIGTTGRIIDFYKQGQIDFKAIQVVVLDEADRM 170          
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: RH47_ARATH (DEAD-box ATP-dependent RNA helicase 47 OS=Arabidopsis thaliana GN=RH47 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.095e-15
Identity = 55/178 (30.90%), Postives = 89/178 (50.00%), Query Frame = 2
Query:  167 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV-------------DTSSREVQALILSPTRELATQ-TEKVILAIGDFINIQAHACVGGKS-VGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLWVLDESDEMRSRRVRDPI 655
            SF+ +G+ D LL  + + GF  P+ +Q  AV  IIKG D + Q+ +G+GKT    L +   +             +    E+QA+I++P+REL  Q   +V   +G          VGG + + ++    ++   +V GTPGR+ ++ K   L T   +  VLDE DE+ S   R+ I
Sbjct:  111 SFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDI 288          
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: MAK5_ASPFU (ATP-dependent RNA helicase mak5 OS=Aspergillus fumigatus GN=mak5 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.095e-15
Identity = 59/187 (31.55%), Postives = 102/187 (54.55%), Query Frame = 2
Query:  137 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV------DTSSREVQ---------ALILSPTRELATQTEKVI---LAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI---KRKTLRTRAIKLWVLDESDEMRS 634
            E  +G + ++++D++G+  ++L G+ +  F  P+++Q+  +  I++G DVI +A +G+GKT    + + +        D S+++ Q         ALILSPTRELA Q  K I   +A    +N +     GG SV +  R L  G  +V GTPGRV +++   +    + + IK  V+DE+D + S
Sbjct:  193 EEDDGAD-VSAWDSLGLSPEILTGLSKMKFGSPTSVQEACIPQILEGHDVIGKASTGSGKTLAFGIPILEHYLEKKRDDISAQKEQMSEKDSTPIALILSPTRELAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQQRLLS-GADIVIGTPGRVWEILSTGQGLIRKMQQIKFLVVDEADRLLS 377          
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: DDX49_MOUSE (Probable ATP-dependent RNA helicase DDX49 OS=Mus musculus GN=Ddx49 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.095e-15
Identity = 47/164 (28.66%), Postives = 84/164 (51.22%), Query Frame = 2
Query:  161 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK-RKTLRTRAIKLWVLDESDEMRSRRVRD 649
            +  F  +G+   L+    Q G ++P+ +Q   +  I++GRD +  A++G+GKT+   L + Q +      +  L+L+PTRELA Q  +    +G  + ++    VGG  +     +L    HVV  TPGR+ D ++   T   + I+  V+DE+D +  +   D
Sbjct:    1 MAGFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTD 164          
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: DDX27_BOVIN (Probable ATP-dependent RNA helicase DDX27 OS=Bos taurus GN=DDX27 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.095e-15
Identity = 53/169 (31.36%), Postives = 83/169 (49.11%), Query Frame = 2
Query:  134 FETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE---VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLWVLDESDEM 628
            FE     +   SF  M +   LL+ I   GF++P+ IQ+  +   + G+D+ A A +GTGKT+  AL V + +    R+    + L+L PTREL  Q   V   +  F +I     VGG  V      L     ++  TPGR+ D +    +    +I++ +LDE+D M
Sbjct:  177 FEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRM 345          
BLAST of EY720866 vs. ExPASy Swiss-Prot
Match: DBP4_YEAST (ATP-dependent RNA helicase DBP4 OS=Saccharomyces cerevisiae GN=DBP4 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.095e-15
Identity = 54/171 (31.58%), Postives = 95/171 (55.56%), Query Frame = 2
Query:  170 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVD----TSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT-LRTRAIKLWVLDESD---EMRSRRVRDPII 658
            F  + I D  L+G+ +  F K + IQ  ++   ++G DV+A A++G+GKT    + V + +     T    + ALI+SPTRELA Q  +V+  IG   +  A   +GGK V  ++ ++   ++++ GTPGR+   + +   L T  +++ VLDE+D   +M  ++  D I+
Sbjct:   43 FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELERISR-INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIV 212          
The following BLAST results are available for this feature:
BLAST of EY720866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_XANCP1.095e-1532.72ATP-dependent RNA helicase rhlB OS=Xanthomonas cam... [more]
RHLB_XANCB1.095e-1532.72ATP-dependent RNA helicase rhlB OS=Xanthomonas cam... [more]
RHLB_XANC81.095e-1532.72ATP-dependent RNA helicase rhlB OS=Xanthomonas cam... [more]
RHLB_VIBSL1.095e-1531.88ATP-dependent RNA helicase rhlB OS=Vibrio splendid... [more]
RHLB_ALISL1.095e-1533.54ATP-dependent RNA helicase rhlB OS=Aliivibrio salm... [more]
RH47_ARATH1.095e-1530.90DEAD-box ATP-dependent RNA helicase 47 OS=Arabidop... [more]
MAK5_ASPFU1.095e-1531.55ATP-dependent RNA helicase mak5 OS=Aspergillus fum... [more]
DDX49_MOUSE1.095e-1528.66Probable ATP-dependent RNA helicase DDX49 OS=Mus m... [more]
DDX27_BOVIN1.095e-1531.36Probable ATP-dependent RNA helicase DDX27 OS=Bos t... [more]
DBP4_YEAST1.095e-1531.58ATP-dependent RNA helicase DBP4 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-015-D09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720866 ID=EY720866; Name=EY720866; organism=Citrus sinensis; type=EST; length=802bp
CACGCGTCCGGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAATTGT
TGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAGAGGA
GGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGGAAGG
AGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGATCTGT
TGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACAACAG
AGGGCCGTTATGCCAATAATAAAGGGCCGTGATGTAATTGCACAGGCCCA
GTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAGACGG
TCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTACGAGG
GAGTTGGCGACGCAGACAGAGAAAGTGATTTTGGCAATTGGTGATTTTAT
TAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAAGATA
TTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGGTAGA
GTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTAAATT
ATGGGTGCTTGATGAGTCTGATGAGATGCGGAGCAGAAGGGTCAGGGATC
CAATTATATGTGTACCGCTATCCTCCACCGGATCTCCCGGGTTGTTCGAA
TTCTGCCCCCCTCCCCCCCAAATTTTGGATATGACAACCAATTCATGACG
GATCCTGGCAAAATCTCGGCAAGCGGTGAGAATTGACTTTGGGGGGGAGC
CC
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