EG358220

Overview
NameEG358220
Unique NameEG358220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358220 vs. ExPASy Swiss-Prot
Match: CRTB_SYNY3 (Phytoene synthase OS=Synechocystis sp. (strain PCC 6803) GN=crtB PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.128e-33
Identity = 73/141 (51.77%), Postives = 98/141 (69.50%), Query Frame = 2
Query:    8 SRYKNFDELYLYCYYVAGTVGLMSVPVMGI-APDSQAT--TESVY---NAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLL 412
            SRY+ F+EL LYCY VAGTVGLMS  V+G+   + QA    ++VY     A+ALG+ANQLTNILRDVGED  RGR+YLP ++L +   S+ D+  G    +WR+ MK +I RAR +F+ AE G+  L+  +RWPVW +L+L
Sbjct:  156 SRYQTFEELDLYCYRVAGTVGLMSSAVLGVDTGNGQAPWQPDAVYIPQEEAIALGVANQLTNILRDVGEDVERGRIYLPLEDLERFNYSEQDLLNGVNDDRWRSLMKFEIDRARHYFEDAERGIRALNRDARWPVWTALML 296          
BLAST of EG358220 vs. ExPASy Swiss-Prot
Match: CRTB_THET2 (Phytoene synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=crtB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.538e-16
Identity = 49/104 (47.12%), Postives = 61/104 (58.65%), Query Frame = 2
Query:   29 ELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFF 340
            EL  YCY VAGTVG M  P+ G   +++A        A+ LG A QLTNILRDVGED  R RVYLP D L   G+  +D+ AG VT  +R  M +   +AR  +
Sbjct:  122 ELLRYCYQVAGTVGRMMAPIAGGGKEAEAR-------AVKLGQAMQLTNILRDVGEDLERDRVYLPLDLLRAHGVEVEDLRAGRVTPGYRALMAHLEGKARALY 218          
BLAST of EG358220 vs. ExPASy Swiss-Prot
Match: CRTB_ESCVU (Phytoene synthase OS=Escherichia vulneris GN=crtB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.907e-14
Identity = 46/129 (35.66%), Postives = 67/129 (51.94%), Query Frame = 2
Query:    8 SRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPV 394
            +RY  F++   YCY+VAG VGLM   VMG+        E V + A  LG+A QLTNI RD+ +DA   R YLP + L  AGL+ ++  A E         +  I  A  ++  ++ G+ +L     W +
Sbjct:  123 TRYVTFEDTLRYCYHVAGVVGLMMARVMGVRD------ERVLDRACDLGLAFQLTNIARDIIDDAAIDRCYLPAEWLQDAGLTPENYAARENRAALARVAERLIDAAEPYYISSQAGLHDLPPRCAWAI 245          
BLAST of EG358220 vs. ExPASy Swiss-Prot
Match: CRTB_PANAN (Phytoene synthase OS=Pantoea ananas GN=crtB PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.490e-14
Identity = 44/131 (33.59%), Postives = 66/131 (50.38%), Query Frame = 2
Query:    2 RGSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPV 394
            R ++Y   D+   YCY+VAG VGLM   +MG+  ++        + A  LG+A QLTNI RD+ +DA  GR YLP   L   GL+ ++  A E         +  ++ A  ++  A  G+  L   S W +
Sbjct:  121 REAQYSQLDDTLRYCYHVAGVVGLMMAQIMGVRDNA------TLDRACDLGLAFQLTNIARDIVDDAHAGRCYLPASWLEHEGLNKENYAAPENRQALSRIARRLVQEAEPYYLSATAGLAGLPLRSAWAI 245          
BLAST of EG358220 vs. ExPASy Swiss-Prot
Match: CRTB_PARSN (Phytoene synthase OS=Paracoccus sp. (strain N81106 / MBIC 01143) GN=crtB PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.108e-13
Identity = 50/132 (37.88%), Postives = 70/132 (53.03%), Query Frame = 2
Query:   14 YKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDDDIFAGEV-TIKWRNFMKNQIKRARMFFDMAENGVTELSEASRWPVWASL 406
            Y+  D++  Y Y+VAG VG+M   VMG+  D       V + A  LG+A QLTNI RDV +DAR GR YLP D L QAG   D    G V + +    +   +  A +++  A  G+ +L     W + A+L
Sbjct:  121 YRTLDDVLEYSYHVAGIVGVMMARVMGVRDDP------VLDRACDLGLAFQLTNIARDVIDDARIGRCYLPGDWLDQAGARVD----GPVPSPELYTVILRLLDAAELYYASARVGLADLPPRCAWSIAAAL 242          
BLAST of EG358220 vs. ExPASy Swiss-Prot
Match: CRTM_STAHJ (Dehydrosqualene synthase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=crtM PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.857e-12
Identity = 43/116 (37.07%), Postives = 62/116 (53.45%), Query Frame = 2
Query:   41 YCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLS-DDDIFAGEVTIKWRNFMKNQIKRARMFFDMAENGVTELSEASR 385
            YCY VAGTVG++ +P++   P  +A     Y     LG A QLTNILRDVGED R GR+Y  +  L +  +S  D+I   +++  +    +     A   +DM  N +   +E SR
Sbjct:  127 YCYGVAGTVGVLLIPILATPPSDEA-----YEYGKQLGEALQLTNILRDVGEDYRNGRIYFSKARLNEFNVSIADEIERDQLSDNYIKIWEFYATLADNNYDMVLNHLDVYNEESR 237          
BLAST of EG358220 vs. ExPASy Swiss-Prot
Match: CRTB_MYCTU (Probable phytoene synthase OS=Mycobacterium tuberculosis GN=crtB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.366e-11
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 2
Query:   17 KNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGL 253
            ++FDEL +YC   AGT+G + + + G  P S AT+      A  LGIA Q TNILRDV ED   GR+YLP+DEL + G+
Sbjct:  116 RDFDELIVYCRRGAGTIGKLCLSIFG--PVSTATSRY----AEQLGIALQQTNILRDVREDFLNGRIYLPRDELDRLGV 188          
BLAST of EG358220 vs. ExPASy Swiss-Prot
Match: CRTB_MYCBO (Probable phytoene synthase OS=Mycobacterium bovis GN=crtB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.366e-11
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 2
Query:   17 KNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGL 253
            ++FDEL +YC   AGT+G + + + G  P S AT+      A  LGIA Q TNILRDV ED   GR+YLP+DEL + G+
Sbjct:  116 RDFDELIVYCRRGAGTIGKLCLSIFG--PVSTATSRY----AEQLGIALQQTNILRDVREDFLNGRIYLPRDELDRLGV 188          
BLAST of EG358220 vs. ExPASy Swiss-Prot
Match: CRTB_STRGR (Phytoene synthase OS=Streptomyces griseus GN=crtB PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 2
Query:   14 YKNFDELYLYCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDD 262
            Y +++EL  Y +  A  +GL  +PV+G      A  E+  +AA ALG+A QLTN LRDVGED  RGR+YLP + LA  G   D
Sbjct:  133 YASYEELGRYMHGSAAVIGLQMLPVLGTVV---AREEAAPHAA-ALGVAFQLTNFLRDVGEDLDRGRLYLPTELLAAHGADRD 211          
The following BLAST results are available for this feature:
BLAST of EG358220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CRTB_SYNY33.128e-3351.77Phytoene synthase OS=Synechocystis sp. (strain PCC... [more]
CRTB_THET24.538e-1647.12Phytoene synthase OS=Thermus thermophilus (strain ... [more]
CRTB_ESCVU1.907e-1435.66Phytoene synthase OS=Escherichia vulneris GN=crtB ... [more]
CRTB_PANAN2.490e-1433.59Phytoene synthase OS=Pantoea ananas GN=crtB PE=3 S... [more]
CRTB_PARSN2.108e-1337.88Phytoene synthase OS=Paracoccus sp. (strain N81106... [more]
CRTM_STAHJ8.857e-1237.07Dehydrosqualene synthase OS=Staphylococcus haemoly... [more]
CRTB_MYCTU3.366e-1149.37Probable phytoene synthase OS=Mycobacterium tuberc... [more]
CRTB_MYCBO3.366e-1149.37Probable phytoene synthase OS=Mycobacterium bovis ... [more]
CRTB_STRGR9.792e-1146.99Phytoene synthase OS=Streptomyces griseus GN=crtB ... [more]

Pages

back to top
Properties
Property NameValue
Genbank description9a8 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0009a8, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358220 ID=EG358220; Name=EG358220; organism=Citrus sinensis; type=EST; length=412bp
ACGCGGGTCAAGATACAAAAACTTTGATGAATTATACTTGTATTGTTATT
ATGTTGCTGGGACCGTAGGGCTAATGAGTGTTCCAGTTATGGGCATAGCA
CCTGACTCACAGGCAACAACAGAGAGCGTCTACAATGCAGCATTGGCACT
AGGGATTGCTAATCAGCTCACTAACATACTCAGAGATGTTGGAGAGGATG
CCCGAAGAGGAAGGGTTTATCTACCACAAGATGAGTTGGCACAGGCAGGG
CTTTCAGATGATGACATATTTGCTGGAGAGGTGACCATTAAATGGAGAAA
CTTCATGAAGAACCAAATTAAGAGGGCAAGGATGTTCTTTGATATGGCTG
AGAACGGTGTGACCGAGCTGAGTGAAGCTAGTCGATGGCCGGTATGGGCT
TCATTGCTGTTG
back to top