CX047746

Overview
NameCX047746
Unique NameCX047746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: P34_SOYBN (P34 probable thiol protease OS=Glycine max PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.086e-12
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = -3
Query:  670 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 840
            ++H V  VGYG+ +G DYWI KNSWG  WGE GYI ++RN  G L G CG+   ASY
Sbjct:  299 INHFVLLVGYGSADGVDYWIAKNSWGFDWGEDGYIWIQRN-TGNLLGVCGMNYFASY 354          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 32/64 (50.00%), Postives = 40/64 (62.50%), Query Frame = -3
Query:  670 CGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 852
            CG +   ++H V AVGYG ENG  YW++KNSWG+ WGE GY +ME          CG+A  ASY
Sbjct:  294 CGDTPMDVNHAVLAVGYGVENGTPYWLIKNSWGADWGEDGYFKMEMG-----KNMCGVATCASY 352          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CRUST_PANBO (Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = -3
Query:  670 DHGVTAVGYGTE-NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 837
            +H VTAVGYGT+ NG DYWIVKNSWG+ WGE GYI+M RN        C IA  + Y
Sbjct:  268 NHAVTAVGYGTDANGGDYWIVKNSWGAWWGESGYIKMARN----RDNNCAIATYSVY 320          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = -3
Query:  670 CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 852
            C  +++HGV  VGYGT +G DYW+VKNSWG  +G+ GYIRM RN        CGIA   SY
Sbjct:  271 CTENMNHGVLVVGYGTLDGKDYWLVKNSWGLHFGDQGYIRMARN----NKNHCGIASYCSY 327          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = -3
Query:  670 CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 852
            C  +++HGV  VGYGT +G DYW+VKNSWG ++G+ GYIRM RN        CGIA   SY
Sbjct:  281 CTGNVNHGVLVVGYGTLDGKDYWLVKNSWGLNFGDQGYIRMARN----NKNHCGIASYCSY 337          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = -3
Query:  670 CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 852
            C  +++HGV  VGYG  NG +YW+VKNSWG ++GE GYIRM RN        CGIA   SY
Sbjct:  272 CTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKG----NHCGIASFPSY 328          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = -3
Query:  670 CGTSLD---HGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 852
            CGT+ D   H V AVGYG ENG  YW++KNSWG+ WG+ GY +ME          C IA  ASY
Sbjct:  299 CGTTPDDVNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMG-----KNMCAIATCASY 357          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.379e-11
Identity = 33/57 (57.89%), Postives = 36/57 (63.16%), Query Frame = -3
Query:  670 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 840
            LDHGV  VGYG E G  YWIVKNSWG  WG+ GYI M ++        CGIA  ASY
Sbjct:  163 LDHGVLVVGYGFEGGKKYWIVKNSWGEKWGDKGYIYMAKD----RKNHCGIATAASY 215          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.801e-11
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = -3
Query:  670 DHGVTAVGYGTENG-ADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 837
            DH V  VGYGT +   DYW+++NSWG  WGEGGY+R++RN     TGKC +A+   Y
Sbjct:  289 DHNVLIVGYGTSSDEGDYWLIRNSWGPEWGEGGYLRLQRNFHEP-TGKCAVAVAPVY 344          
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = -3
Query:  670 CGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 852
            CGT+   ++H V AVGYG E+G  YW++KNSWG+ WG+ GY +ME          CG+A  ASY
Sbjct:  298 CGTTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDEGYFKMEMG-----KNMCGVATCASY 356          
The following BLAST results are available for this feature:
BLAST of CX047746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
P34_SOYBN8.086e-1256.14P34 probable thiol protease OS=Glycine max PE=1 SV... [more]
CYSP3_SOLLC1.056e-1150.00Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
CRUST_PANBO1.056e-1159.65Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1[more]
CATS_RAT1.056e-1154.10Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]
CATS_MOUSE1.056e-1154.10Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
CATS_HUMAN1.056e-1154.10Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
ALEU_HORVU1.056e-1151.56Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CATL1_CHICK1.379e-1157.89Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
CPR2_ARATH1.801e-1152.63Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
CYSP2_MAIZE2.353e-1148.44Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_16C08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16C08-E15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047746 ID=CX047746; Name=CX047746; organism=Citrus sinensis; type=EST; length=854bp
TTTTTTTTTTTTTTTTTCGTTAAATATCAATTCATAAAAGCCTCCGCTGA
ATGATGCCAGGGATTTGGTGGAGGACATTGGAAATAGATAACAACAATTT
GTTTGTGCATTGTTCGGATTCAACGCAAATAGATAACTTACAACGCTATA
TACAAAACCAACGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGT
ACATTAACGTTTGAAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGA
AACTCATTCACAAGCACGAATATCTTCATCCTCCCTTCGGCCTTCCACTG
CTCTTACAGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTGATTTC
CATGAGCCCAGTAAGGTTTAGCAGGGGTGCGTCGCAATGCCCTCACTCCC
AATGGGTTGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTACAGAT
GGGATAGTCATGTGGGCAGCAGCTATAGTGGTCATCACAGCAGGTGGCAG
CCTCAAGCGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAG
ACACAGCAGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCACACAC
AGCAGGAGGCTTTGTTGGAGATGGAGGAGACGGTCCGGGGTTGGGAGGAT
TTTGGCCTTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCACACTTG
CCCGTGAGAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCACCCTC
TCCCCAGCTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGCTCCAT
TTTCTGTGCCATATCCAACAGCAGTAACACCATGGTCCAGAGATGTCCCA
CATC
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