CX047746

Overview
NameCX047746
Unique NameCX047746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.013e-11
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = -3 
Query:  670 LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 840
            ++H V AVGYG +NG  YWIVKNSWGS WGE GY  +ER         CG+A  ASY
Sbjct:  277 VNHAVLAVGYGEQNGLLYWIVKNSWGSQWGENGYFLIERG-----KNMCGLAACASY 328
[Close]
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.241e-11
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = -3 
Query:  670 CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 852
            C  +++HGV  VGYG  +G DYW+VKNSWG  +G+ GYIRM RN        CGIA   SY
Sbjct:  272 CTQNVNHGVLVVGYGNLDGKDYWLVKNSWGLHFGDQGYIRMARNSG----NHCGIANYPSY 328
[Close]
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.241e-11
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = -3 
Query:  670 CGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 852
            CG++   ++H V AVGYG E+G  YW++KNSWG+ WG+ GY +ME          CGIA  ASY
Sbjct:  296 CGSTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDKGYFKMEMG-----KNMCGIATCASY 354
[Close]
BLAST of CX047746 vs. ExPASy Swiss-Prot
Match: ERVC_TABDI (Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.940e-11
Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = -3 
Query:  685 CGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIA 852
            CGT L+HGVT VGY     A+YWIV+NSWG  WGE GYIRM R V G   G CGIA
Sbjct:  151 CGTKLNHGVTIVGYQ----ANYWIVRNSWGRYWGEKGYIRMLR-VGG--CGLCGIA 199
The following BLAST results are available for this feature:
BLAST of CX047746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
CATH_MOUSE4.013e-1156.14Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
CATS_BOVIN5.241e-1152.46Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
ALEU_ARATH5.241e-1148.44Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
ERVC_TABDI8.940e-1164.29Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_16C08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16C08-E15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047746 ID=CX047746; Name=CX047746; organism=Citrus sinensis; type=EST; length=854bp
TTTTTTTTTTTTTTTTTCGTTAAATATCAATTCATAAAAGCCTCCGCTGA
ATGATGCCAGGGATTTGGTGGAGGACATTGGAAATAGATAACAACAATTT
GTTTGTGCATTGTTCGGATTCAACGCAAATAGATAACTTACAACGCTATA
TACAAAACCAACGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGT
ACATTAACGTTTGAAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGA
AACTCATTCACAAGCACGAATATCTTCATCCTCCCTTCGGCCTTCCACTG
CTCTTACAGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTGATTTC
CATGAGCCCAGTAAGGTTTAGCAGGGGTGCGTCGCAATGCCCTCACTCCC
AATGGGTTGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTACAGAT
GGGATAGTCATGTGGGCAGCAGCTATAGTGGTCATCACAGCAGGTGGCAG
CCTCAAGCGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAG
ACACAGCAGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCACACAC
AGCAGGAGGCTTTGTTGGAGATGGAGGAGACGGTCCGGGGTTGGGAGGAT
TTTGGCCTTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCACACTTG
CCCGTGAGAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCACCCTC
TCCCCAGCTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGCTCCAT
TTTCTGTGCCATATCCAACAGCAGTAACACCATGGTCCAGAGATGTCCCA
CATC
back to top