CX047739

Overview
NameCX047739
Unique NameCX047739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.990e-39
Identity = 90/214 (42.06%), Postives = 133/214 (62.15%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE-KVTPNNVDIARV 704
            YD     FSPEGRL+QVEYA+EAI    +A+G+   +GVVL  EK++TS LL+ S S EK+ +ID H+ CA++G+++DA  L+  AR+  Q +  SY EP+ VE   Q+LCD    +    +    RPFGVS L AG D+ +G  LY +DPSG +    A A+G+ S+ A S L++ Y   +T +EA  +AL +L + M+   +T   +++A V
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDSTSLTAEKLELAEV 215          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA7L_MACFA (Proteasome subunit alpha type-7-like OS=Macaca fascicularis GN=PSMA7L PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.394e-39
Identity = 91/240 (37.92%), Postives = 140/240 (58.33%), Query Frame = 3
Query:   66 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSI--LKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVINRL*VSRE 776
            + YDR +  FSP+G LFQVEYA EA+K GSTA+G++    VVL VEK+  + L +  +V KI  +D+H+  A +GL ADAR ++  ARVE Q+H+ +  +P+TVE  T+ +  L  ++ + +     RPFG+S LI G D++G P LY TDPSGT+    A AIG  ++     L++ Y +D    + E I L+I  L +V++       + I R      +++  EVE  +  +   +E
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGR---RPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDNEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEKE 239          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA7B_XENLA (Proteasome subunit alpha type-7-B OS=Xenopus laevis GN=psma7-B PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.394e-39
Identity = 94/240 (39.17%), Postives = 139/240 (57.92%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVEAVINRL*VSRENH 782
            YDR +  FSP+G LFQVEYA EA+K GSTA+G++ KE VVL VEK+  + L +  +V KI  +DE++  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT+    A AIG G++     L++ Y  +    +  TI L I   +   +    N+++A  R      +  P E+E  +  +   +E +
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIERYVAEIEKEKEEN 239          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA7A_XENLA (Proteasome subunit alpha type-7-A OS=Xenopus laevis GN=psma7-A PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.394e-39
Identity = 94/240 (39.17%), Postives = 139/240 (57.92%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVEAVINRL*VSRENH 782
            YDR +  FSP+G LFQVEYA EA+K GSTA+G++ KE VVL VEK+  + L +  +V KI  +DE++  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT+    A AIG G++     L++ Y  +    +  TI L I   +   +    N+++A  R      +  P E+E  +  +   +E +
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIERYVAEIEKEKEEN 239          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA7_MOUSE (Proteasome subunit alpha type-7 OS=Mus musculus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.789e-39
Identity = 93/240 (38.75%), Postives = 139/240 (57.92%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVEAVINRL*VSRENH 782
            YDR +  FSP+G LFQVEYA EA+K GSTA+G++ K+ VVL VEK+  + L +  +V KI  +D+++  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT+    A AIG G++     L++ Y  D    +  TI L I   +   +    N+++A  R      +  P E+E  +  +   +E +
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEIEKEKEEN 239          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA7_CARAU (Proteasome subunit alpha type-7 OS=Carassius auratus GN=psma7 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.789e-39
Identity = 88/210 (41.90%), Postives = 128/210 (60.95%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA 698
            YDR +  FSP+G LFQVEYA EA+K GSTA+G++ K+ VVL VEK+  + L E  +V KI  +DEH+  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT+    A AIG  ++     L++ Y  +    + + I L+I   +   +    N+++A
Sbjct:    5 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGKDIVVLGVEKKSVAKLQEERTVRKICALDEHVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIATLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTDEAIASDNDAIKLAIKALLEVVQSGGKNIELA 211          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA7L_MOUSE (Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.789e-39
Identity = 89/235 (37.87%), Postives = 139/235 (59.15%), Query Frame = 3
Query:   66 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSI--LKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVINRL 761
            + YDR +  FSP+G LFQVEYA EA+K GSTA+G++    VVL VEK+  + L +  +V KI  +D+H+  A +GL ADAR ++  ARVE Q+H+ +  +P+TVE  T+ +  L  ++ + +     RPFG+S LI G D++G P LY TDPSGT+    A AIG  ++     L++ Y +D    + E I L+I  L +V++       + I R      +++  E+E  ++ +
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGR---RPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDKEAIKLAIKALLEVVQSGGKNIELAIIRRDQPLKMFSAKEIELEVSEI 234          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA7_CHICK (Proteasome subunit alpha type-7 OS=Gallus gallus GN=PSMA7 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.561e-39
Identity = 93/241 (38.59%), Postives = 139/241 (57.68%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA---RVAPTYHLYTPSEVEAVINRL*VSRENH 782
            YDR +  FSP+G LFQVEYA EA+K GSTA+G++ K+ VVL VEK+  + L +  +V KI  +D+++  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+    +    RPFG+S LI G D +G P LY TDPSGT+    A AIG G++      ++ Y  +    +  TI L I   +   +    N+++A   R  P   L +P E+E  +  +   +E +
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRY---TQSKRRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVRVEFEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILTSPEEIEKYVAEIEKEKEEN 240          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA7_BOVIN (Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.684e-38
Identity = 92/240 (38.33%), Postives = 139/240 (57.92%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVEAVINRL*VSRENH 782
            YDR +  FSP+G LFQVEYA EA+K GSTA+G++ K+ VVL VEK+  + L +  +V KI  +D+++  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT+    A AIG G++     L++ Y  +    +  TI L I   +   +    N+++A  R      +  P E+E  +  +   +E +
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEKYVAEIEKEKEEN 239          
BLAST of CX047739 vs. ExPASy Swiss-Prot
Match: PSA7_SOLLC (Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.200e-38
Identity = 93/231 (40.26%), Postives = 139/231 (60.17%), Query Frame = 3
Query:   72 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG--PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHL--YTPSEVEAVI 752
            YDR +  FSP+G LFQVEYA+EA++ G+ A+G++  + VVL VEK+ T  L +  SV KI+ +D+HI  A +GL ADAR LV  AR+E Q+HR +  +P+TVE  T+ +  L  ++    +    RPFG+S LI G D +   PSLY TDPSGTF    A A G  S      L++ Y K+ + QE   +A+  L +V+E      N+++A +   + L     +E++A++
Sbjct:    4 YDRAITVFSPDGHLFQVEYAMEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSVRKIVNLDDHIALACAGLKADARVLVNKARIECQSHRLTVEDPVTVEYITRYIAGLQQKY---TQSGGVRPFGLSTLIIGFDPHTGVPSLYQTDPSGTFSAWKANATGRNSNSTREFLEKNY-KETSGQETVKLAIRALLEVVES--GGKNIEVAVMTKEHGLKQLEEAEIDAIV 228          
The following BLAST results are available for this feature:
BLAST of CX047739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
PSA4A_ORYSI1.990e-3942.06Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA7L_MACFA3.394e-3937.92Proteasome subunit alpha type-7-like OS=Macaca fas... [more]
PSA7B_XENLA3.394e-3939.17Proteasome subunit alpha type-7-B OS=Xenopus laevi... [more]
PSA7A_XENLA3.394e-3939.17Proteasome subunit alpha type-7-A OS=Xenopus laevi... [more]
PSA7_MOUSE5.789e-3938.75Proteasome subunit alpha type-7 OS=Mus musculus GN... [more]
PSA7_CARAU5.789e-3941.90Proteasome subunit alpha type-7 OS=Carassius aurat... [more]
PSA7L_MOUSE5.789e-3937.87Proteasome subunit alpha type-7-like OS=Mus muscul... [more]
PSA7_CHICK7.561e-3938.59Proteasome subunit alpha type-7 OS=Gallus gallus G... [more]
PSA7_BOVIN1.684e-3838.33Proteasome subunit alpha type-7 OS=Bos taurus GN=P... [more]
PSA7_SOLLC2.200e-3840.26Proteasome subunit alpha type-7 OS=Solanum lycoper... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_16C05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16C05-E9-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047739 ID=CX047739; Name=CX047739; organism=Citrus sinensis; type=EST; length=837bp
CCGGTATCGACTCTTAAGCTCAGGTTTCCAGATCCAATCAGCAACAAAAC
ATGTTCCTTACAAGGACTGAGTATGATAGAGGAGTGAACACTTTCTCTCC
AGAAGGAAGATTGTTTCAGGTCGAATATGCTATTGAGGCCATTAAGCTGG
GTTCAACTGCAATTGGGTTGAAGACGAAAGAAGGGGTTGTGCTTGCTGTC
GAGAAACGCATTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAGAAGAT
TATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGATTGCTG
ATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATCATAGA
TTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCACTCTG
TGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTCTCGAC
CATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGACCTAGC
CTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCAAAGGC
TATTGGTTCAGGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCAATATA
ACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAATTTTG
AAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATCGCAAG
GGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGCTGTCA
TCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCTTCCCT
GGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGCAA
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