CX047708

Overview
NameCX047708
Unique NameCX047708
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047708 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.130e-35
Identity = 78/216 (36.11%), Postives = 123/216 (56.94%), Query Frame = -2 
Query:  241 QILLQLKLVDAIKEAGNVKRFCXSEFGTDPAKMANAMEPGRVTFDDKMVVRKAIEDAGIPFTYVSANCFAGYFLGGLCQPGSILPSKDSVVLLGDGNPKAIYVDEDDIAMYTMKAINDPRTLNRTMYLRPPKNILSQREVVETWEKLIGKTLQKSSISKEEFLASMKEQNYAGQVGLTHYYHVCYEGCLTNFEIG-NEGVEASQLYPEIKYTTVEE 885
            ++L QL L++AIK    +KRF  SEFG D  +  + +EPG   + +K +VR+A+E+ GIPFT +  N  A +     C P  + P  D   + GDGN KA ++D +DI  +TMK I+D RTLN+ ++ RP  N  S  E+   WEK IG+TL + +++ ++ LA   E      +  +  + +   GC  NF I  +  VE   LYP+ K+ ++++
Sbjct:   97 RLLDQLTLLEAIKSVKTIKRFLPSEFGHDVDR-TDPVEPGLTMYKEKRLVRRAVEEYGIPFTNICCNSIASWPYYDNCHPSQVPPPMDQFQIYGDGNTKAYFIDGNDIGKFTMKTIDDIRTLNKNVHFRPSSNCYSINELASLWEKKIGRTLPRFTVTADKLLAHAAENIIPESIVSSFTHDIFINGCQVNFSIDEHSDVEIDTLYPDEKFRSLDD 311
The following BLAST results are available for this feature:
BLAST of CX047708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAR_DESUN1.130e-3536.11Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_16A09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16A09-A17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047708 ID=CX047708; Name=CX047708; organism=Citrus sinensis; type=EST; length=892bp
CTCAAGTAATCTCCACTGAAGGAGGAATTTATTTATATATAGGAGAAAAA
TAATTACACTCAGTCAAAGGACGACATACAAATAAAGCACTGGAAAATCA
AAGAAAACTCCATAAAACTTGAAAGCAACATTCAATCATCGAAATGCTTT
TTTTTTATTTATTTATACCATTTTCTTTATAAATGATATAAAGTAATTAA
TTTCTTTAACAGATAAAAATTACAAATAGCGTCGCAAATACTCTTCCACC
GTAGTGTACTTAATTTCTGGATAAAGTTGAGAAGCTTCGACGCCTTCATT
TCCGATTTCGAAATTTGTAAGACATCCCTCGTAGCACACATGATAGTAAT
GTGTTAATCCAACCTGCCCCGCATAATTTTGTTCTTTCATTGAAGCTAGA
AATTCTTCCTTAGAAATTGAAGATTTTTGCAACGTTTTGCCAATCAATTT
CTCCCAAGTTTCAACAACCTCTCTTTGAGATAAGATATTTTTGGGAGGCC
TAAGGTACATGGTCCTGTTGAGGGTCCGAGGGTCATTAATAGCTTTCATT
GTGTACATAGCTATATCATCTTCATCCACATATATCGCTTTAGGATTGCC
ATCTCCCAACAAGACCACGGAATCCTTTGAAGGAAGAATGCTACCAGGTT
GGCAGAGACCGCCAAGGAAATAACCGGCAAAGCAATTTGCAGAAACATAT
GTAAAAGGAATCCCTGCATCTTCAATTGCTTTCCTCACTACCATTTTATC
ATCAAACGTCACTCTCCCAGGTTCCATTGCATTCGCCATTTTTGCTGGGT
CAGTCCCAAATTCTGACNGGCAGAATCTCTTAACATTTCCAGCTTCTTTG
ATTGCATCAACAAGCTTGAGTTGAAGGAGAATTTGATGGCTT
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