CX047687

Overview
NameCX047687
Unique NameCX047687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 50/139 (35.97%), Postives = 81/139 (58.27%), Query Frame = 3
Query:   72 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKK 488
            DL ++P A  SAG V + ++F W  TI+GPPD+ Y+GG F   + FP++YP  PP + FTT+I+HPN+  +G +C+ IL               +W P  TV  ++LSI S+L  PN + P   + A+ ++  ++ + +
Sbjct:   12 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 50/139 (35.97%), Postives = 81/139 (58.27%), Query Frame = 3
Query:   72 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKK 488
            DL ++P A  SAG V + ++F W  TI+GPPD+ Y+GG F   + FP++YP  PP + FTT+I+HPN+  +G +C+ IL               +W P  TV  ++LSI S+L  PN + P   + A+ ++  ++ + +
Sbjct:   12 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 50/139 (35.97%), Postives = 81/139 (58.27%), Query Frame = 3
Query:   72 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKK 488
            DL ++P A  SAG V + ++F W  TI+GPPD+ Y+GG F   + FP++YP  PP + FTT+I+HPN+  +G +C+ IL               +W P  TV  ++LSI S+L  PN + P   + A+ ++  ++ + +
Sbjct:   12 DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = 3
Query:   72 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 512
            DL ++P +  SAG V E ++F W  TI+GP D+ Y GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL              ++W P  T+  ++LSI SML+ PN + P   E A  ++  R  ++       R+
Sbjct:   12 DLGRDPPSSCSAGPVGE-DLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILR-------------DQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRK 144          
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 51/139 (36.69%), Postives = 80/139 (57.55%), Query Frame = 3
Query:   72 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKK 488
            DL ++P A  SAG V + ++F W  TI+GPP++ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+  ++LSI S+L  PN + P   E A+ ++  R+ + +
Sbjct:   12 DLGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQ 136          
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 51/139 (36.69%), Postives = 79/139 (56.83%), Query Frame = 3
Query:   72 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKK 488
            DL ++P A  SAG V + ++F W  TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+  ++LSI S+L  PN + P   E A+ ++  R+ + +
Sbjct:   12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 51/139 (36.69%), Postives = 79/139 (56.83%), Query Frame = 3
Query:   72 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKK 488
            DL ++P A  SAG V + ++F W  TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+  ++LSI S+L  PN + P   E A+ ++  R+ + +
Sbjct:   12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 51/139 (36.69%), Postives = 79/139 (56.83%), Query Frame = 3
Query:   72 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKK 488
            DL ++P A  SAG V + ++F W  TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+  ++LSI S+L  PN + P   E A+ ++  R+ + +
Sbjct:   12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 51/139 (36.69%), Postives = 79/139 (56.83%), Query Frame = 3
Query:   72 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKK 488
            DL ++P A  SAG V + ++F W  TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+  ++LSI S+L  PN + P   E A+ ++  R+ + +
Sbjct:   12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
BLAST of CX047687 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 51/139 (36.69%), Postives = 79/139 (56.83%), Query Frame = 3
Query:   72 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKK 488
            DL ++P A  SAG V + ++F W  TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T+  ++LSI S+L  PN + P   E A+ ++  R+ + +
Sbjct:   12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
The following BLAST results are available for this feature:
BLAST of CX047687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
UB2D1_MOUSE4.873e-2235.97Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN4.873e-2235.97Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN4.873e-2235.97Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC1_MAGGR6.364e-2236.05Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC2_CAEEL1.086e-2136.69Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UB2D2_XENLA1.418e-2136.69Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT1.418e-2136.69Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE1.418e-2136.69Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN1.418e-2136.69Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN1.418e-2136.69Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15H09_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15H09-P18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047687 ID=CX047687; Name=CX047687; organism=Citrus sinensis; type=EST; length=713bp
TCCAGCTCTCTCTCTCTACTAAAATCATGGCGGCATCTCAGGCAAGTCTC
CTCTTGCAAAAACAACTAAAAGATCTTTGTAAGAACCCTGTTGCTGGGTT
TTCTGCCGGGTTGGTGGATGAGACAAATATCTTTGAATGGAGTGTTACAA
TTATTGGACCACCTGATACTCTTTATGAGGGGGGATTTTTCAATGCCATT
ATGAGCTTTCCATCAAACTACCCTAATAGCCCACCTACAGTGAAGTTTAC
AACAGAGATTTGGCATCCTAATGTCTATCCGGATGGGCGTGTCTGCATAT
CAATCCTTCATCCTCCAGGTGACGACCCTAATGGATATGAGCTTGCAAGT
GAGCGCTGGATGCCTGTTCATACTGTTGAAAGTATCGTTTTGAGTATCAT
ATCAATGCTTTCCGGTCCTAATGATGAATCTCCTGCAAATGTCGAAGCTG
CAAAAGAATGGAGAGACAGGAGAGATGACTTCAAGAAGAAAGTAGGCCGC
TGTGTGAGAAGATCACAAGAAATGTTGTAATCCAACTGCAGGCACTCTTT
TTTTCTCTACCTATGTGTTTGTACGGGAAATGTCTTGATTTAATTGTGTG
GGGGGAACTGGGTTCTGTGGGTAATGTCAATGTGCTTGGTCTTGTGTAGA
CTGGCATTTTGAAGTTCTCTCAACCATCTCTCTCGTTTTCTCTGCATGGT
CAAGTCACTGCCT
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