CX047686

Overview
NameCX047686
Unique NameCX047686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 7.514e-39
Identity = 72/136 (52.94%), Postives = 96/136 (70.59%), Query Frame = -2
Query:  238 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAA---KEWRDRR 636
            L + PV GF   LVDE +++ W V I GPP+T YEGG+F A + FP +YP SPP  +F T++WHPN+Y  G VCISILHPP DDP   EL SERW P   V +I+LS+IS+L+ PN  SPANV+A+   ++W++ +
Sbjct:   20 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESK 155          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 70/152 (46.05%), Postives = 99/152 (65.13%), Query Frame = -2
Query:  196 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 636
            L +NP   F    V+E NI EW V + GPPDTLYEGG F A ++FP  YP +PP + FT+E+WHPN+YPDGR+CISILH    +  G       W P   +++I+LS+IS+L+ PN +SPANV+AAK +R     +  + +  +V + V++S
Sbjct:   13 LIENPSENFKIS-VNENNITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQGM-----TWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKYVYKEDLESYPMEVKKTVKKS 158          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.241e-33
Identity = 71/152 (46.71%), Postives = 97/152 (63.82%), Query Frame = -2
Query:  196 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 636
            L +NP   F    V+E N+ EW V + GP DTLYEGG F A + FP NYP  PP + FT+E+WHPN+Y DGRVCISILH    +  G       W PV  +++I+LS+IS+L+ PN +SPANV+AAK +R     +  + +  +V R V++S
Sbjct:   13 LTENPSENFKVS-VNENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGM-----TWSPVQKIDTILLSVISLLNEPNTDSPANVDAAKSYRRFVHKEDLESYPMEVKRTVKKS 158          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.766e-33
Identity = 70/148 (47.30%), Postives = 99/148 (66.89%), Query Frame = -2
Query:  190 KNPVAGFSAGLVDETNIFEWSVTI-IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 630
            K  +  F   L D++NIF W++ + +   D++Y GGFF A M FP ++P SPP  +FT  I+HPNVY DGR+CISILH  G DP   E  +E W PV TVES+++SI+S+L  PN  SPANV+AA ++R   + +K++V   V RS++
Sbjct:   23 KKAIPSFHIELEDDSNIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSG-DPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYKQRVKMEVERSKQ 169          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.612e-33
Identity = 68/152 (44.74%), Postives = 99/152 (65.13%), Query Frame = -2
Query:  196 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 636
            L +NP   F    V+E ++ EW V + GPPDTLYEGG F A ++FP  YP +PP + FT+E+WHPN+YPDG++CISILH    +  G       W P   +++I+LS+IS+L+ PN +SPANV+AAK +R     +  + +  +V R V++S
Sbjct:   13 LIENPSENFKIS-VNENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQGM-----TWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKLMHKEDLESYPMEVKRTVKKS 158          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.047e-33
Identity = 67/153 (43.79%), Postives = 97/153 (63.40%), Query Frame = -2
Query:  196 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 639
            +L +NP   F    V+E N+ EW V + GP DT YEGG F A ++FP NYP  PP + FT+E+WHPN+YPDGR+CISILH    +  G       W P   +E+++LS+IS+ + PN +SPANV+AAK +R     +  + +  +V + V++S
Sbjct:   12 NLTENPSEHFKVS-VNENNLTEWDVILKGPSDTFYEGGLFKAKITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILHTDNVEERGM-----TWSPAQKIETVLLSVISLFNEPNTDSPANVDAAKSYRKLMHKEDLESYPMEVKKTVKKS 158          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.982e-31
Identity = 66/153 (43.14%), Postives = 96/153 (62.75%), Query Frame = -2
Query:  196 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWR-----DRRDDFKKKVGRCVRRS 639
            +L  NP   F    V+E N+ EW V + GPPDTLYEGG F A + FP  YP  PP + FT+E+WHPN+Y DG++CISILH    +  G       W P   +++++LS+IS+L+ PN +SPANV+AAK +R     +  + +  +V + V++S
Sbjct:   12 NLIVNPSEHFKIS-VNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGM-----TWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYRKYLYKEDLESYPMEVKKTVKKS 158          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 61/146 (41.78%), Postives = 85/146 (58.22%), Query Frame = -2
Query:  190 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 627
            +P AG SA  V + N+  W+  IIGP DT +E G F  +M F   YPN PP VKF +E++HPNVY  G +C+ IL               RW P + V +++ SI S+L+ PN  SPANVEA+  ++D R ++ K+V   V +S E
Sbjct:   19 DPPAGVSASPVPD-NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDIL-------------QNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEKSWE 150          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.617e-27
Identity = 60/146 (41.10%), Postives = 86/146 (58.90%), Query Frame = -2
Query:  190 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 627
            +P AG SA  + + N+  W+  IIGP DT +E G F  +M F   YPN PP VKF ++++HPNVY +G +C+ IL               RW P + V +++ SI S+L+ PN  SPANVEA+  ++D R ++ K+V   V RS E
Sbjct:   19 DPPAGVSASPIPD-NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDIL-------------QNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSWE 150          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.125e-26
Identity = 62/146 (42.47%), Postives = 85/146 (58.22%), Query Frame = -2
Query:  190 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 627
            +P AG SA  V + N+  W+  IIGP DT +E G F  +M F   YPN PP VKF ++++HPNVY  G +C+ IL               RW P + V +I+ SI S+L+ PN  SPANVEA+  +RD R ++ K+V   V +S E
Sbjct:   19 DPPAGVSASPVAD-NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDIL-------------QNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEKSWE 150          
The following BLAST results are available for this feature:
BLAST of CX047686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
UB2R1_HUMAN7.514e-3952.94Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBC_ASFB74.267e-3446.05Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFP41.241e-3346.71Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC3_YEAST2.766e-3347.30Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UBC_ASFWA3.612e-3344.74Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFK58.047e-3343.79Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFM21.982e-3143.14Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC2_NECHA5.052e-2741.78Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBC2_TRIHA8.617e-2741.10Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_EMENI1.125e-2642.47Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15H09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15H09-P18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047686 ID=CX047686; Name=CX047686; organism=Citrus sinensis; type=EST; length=709bp
CAGTGACTTGACCATGCAGAGAAAACGAGAGAGATGGTTGAGAGAACTTC
AAAATGCCAGTCTACACAAGACCAAGCACATTGACATTACCCACAGAACC
CAGTTCCCCCCACACAATTAAATCAAGACATTTCCCGTACAAACACATAG
GTAGAGAAAAAAAGAGTGCCTGCAGTTGGATTACAACATTTCTTGTGATC
TTCTCACACAGCGGCCTACTTTCTTCTTGAAGTCATCTCTCCTGTCTCTC
CATTCTTTTGCAGCTTCGACATTTGCAGGAGATTCATCATTAGGACCGGA
AAGCATTGATATGATACTCAAAACGATACTTTCAACAGTATGAACAGGCA
TCCAGCGCTCACTTGCAAGCTCATATCCATTAGGGTCGTCACCTGGAGGA
TGAAGGATTGATATGCAGACACGCCCATCCGGATAGACATTAGGATGCCA
AATCTCTGTTGTAAACTTCACTGTAGGTGGGCTATTAGGGTAGTTTGATG
GAAAGCTCATAATGGCATTGAAAAATCCCCCCTCATAAAGAGTATCAGGT
GGTCCAATAATTGTAACACTCCATTCAAAGATATTTGTCTCATCCACCAA
CCCGGCAGAAAACCCAGCAACAGGGTTCTTACAAAGATCTTTTAGTTGTT
TTTGCAAGAGGAGACTTGCCTGAGATGCCGCCATGATTTTAGTAGAGAGA
GAGAGCTGG
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