CX047686

Overview
NameCX047686
Unique NameCX047686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.685e-20
Identity = 51/138 (36.96%), Postives = 76/138 (55.07%), Query Frame = -2
Query:  226 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFK 639
            DL K+P    SAG V E ++F W  TI+GP D+ Y GG F   + FP +YP  PP V F T+++HPN+  +G +C+ IL              E+W P  T+  ++LSI S+L+ PN + P   E A  ++  R  ++
Sbjct:   12 DLQKDPPTSCSAGPVAE-DMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 135          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 47/123 (38.21%), Postives = 68/123 (55.28%), Query Frame = -2
Query:  217 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKV 585
            ++  W V I G P T +EGG +   M+FP  YP  PP  +FT  ++HPNVYP G VC+SIL+             E W P  T++ I+L I  +L  PN  SPA  EA   ++  + +++K+V
Sbjct:   37 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILN-----------EEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRV 148          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 50/138 (36.23%), Postives = 76/138 (55.07%), Query Frame = -2
Query:  226 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFK 639
            DL K+P    SAG V E ++F W  TI+GP ++ Y GG F   + FP +YP  PP V F T+++HPN+  +G +C+ IL              E+W P  T+  ++LSI S+L+ PN + P   E A  ++  R  ++
Sbjct:   12 DLQKDPPTSCSAGPVAE-DMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 135          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.982e-20
Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = -2
Query:  226 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFK 639
            DL K+P    SAG V E ++F W  TI+GP ++ Y GG F   + FP +YP  PP V F T+++HPN+  +G +C+ IL              E+W P  T+  ++LSI S+L+ PN + P   E A  ++  ++ ++
Sbjct:   12 DLQKDPPTSCSAGPVAE-DMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYE 135          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.812e-20
Identity = 48/139 (34.53%), Postives = 78/139 (56.12%), Query Frame = -2
Query:  223 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKK 639
            DL ++P+      LVD+ N+F W+ T +GP D++Y GG F+  + FP +YP  PPT++FTT I+HPN   +G VC++I            L  + + P   + S++  I+ +L  PN + P     A+++R+ R  F K
Sbjct:   18 DLREHPIPDIRVNLVDD-NLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAI------------LKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDK 143          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 46/138 (33.33%), Postives = 78/138 (56.52%), Query Frame = -2
Query:  226 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFK 639
            DL ++P +  SAG V + +++ W  +I+GPPD+ Y GG F   + FP++YP  PP +  TT+I+HPN+  +G +C+ IL              ++W P  T+  ++LSI S+L+  N + P   E A  ++  R  ++
Sbjct:   12 DLGRDPPSSCSAGPVGD-DLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDIL-------------KDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYE 135          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = -2
Query:  220 FSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKK 612
            FS G  +  NI+EW+  I GP  T YEGG FN  + FP++YP  PP   F T I+HPN+  +G +C++IL              ++W P   VE ++LSI+ +L  PN + P   E  + +++ R  F ++
Sbjct:   27 FSIGQ-NSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNIL-------------KDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQR 143          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 48/134 (35.82%), Postives = 74/134 (55.22%), Query Frame = -2
Query:  238 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRR 639
            DL ++P    SAG   + ++F+W  TI+GP D+ + GG F   + FP +YP  PP V F T+++HPN+  +G +C+ IL              E+W P  TV  ++LSI S+L+ PN + P   E A  ++  R
Sbjct:   12 DLQRDPPVSCSAGPTGD-DMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDIL-------------KEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDR 131          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19
Identity = 47/131 (35.88%), Postives = 75/131 (57.25%), Query Frame = -2
Query:  247 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEAAKEWR 639
            DL ++P A  SAG V + +++ W  +I+GP D+ Y GG F   + FP++YP  PP V FTT+I+HPN+   G +C+ IL              ++W P  T+  ++LSI S+L+  N + P   E A+ ++
Sbjct:   13 DLGRDPPASCSAGPVGD-DLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDIL-------------KDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYK 129          
BLAST of CX047686 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.128e-18
Identity = 44/112 (39.29%), Postives = 67/112 (59.82%), Query Frame = -2
Query:  262 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV-YPDGRVCISILHPPGDDPNGYELASERWMPVHTVESIVLSIISMLSGPNDESPANVEA 594
            DE++++ W   I GPPDT YE G F   +S P+NYP  PPT+KF T+I+HPN+ +  G +C+ +L                W  ++T++S+  SII++LS P  +SP N +A
Sbjct:   26 DESDLYRWVAIIKGPPDTPYENGKFELDISVPTNYPLQPPTIKFVTKIFHPNIHFKTGEICLDLL-------------KTSWSAIYTLQSVCRSIIALLSLPEADSPLNCDA 124          
The following BLAST results are available for this feature:
BLAST of CX047686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
UBC4_SOLLC2.685e-2036.96Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC9_SCHPO4.580e-2038.21SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC8_ARATH4.580e-2036.23Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC10_ARATH5.982e-2035.51Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC14_SCHPO7.812e-2034.53Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC4_CANAL2.969e-1933.33Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBC31_ARATH3.877e-1935.88Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC30_ARATH3.877e-1935.82Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC5_YEAST6.614e-1935.88Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBCX_DICDI1.128e-1839.29Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15H09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15H09-P18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047686 ID=CX047686; Name=CX047686; organism=Citrus sinensis; type=EST; length=709bp
CAGTGACTTGACCATGCAGAGAAAACGAGAGAGATGGTTGAGAGAACTTC
AAAATGCCAGTCTACACAAGACCAAGCACATTGACATTACCCACAGAACC
CAGTTCCCCCCACACAATTAAATCAAGACATTTCCCGTACAAACACATAG
GTAGAGAAAAAAAGAGTGCCTGCAGTTGGATTACAACATTTCTTGTGATC
TTCTCACACAGCGGCCTACTTTCTTCTTGAAGTCATCTCTCCTGTCTCTC
CATTCTTTTGCAGCTTCGACATTTGCAGGAGATTCATCATTAGGACCGGA
AAGCATTGATATGATACTCAAAACGATACTTTCAACAGTATGAACAGGCA
TCCAGCGCTCACTTGCAAGCTCATATCCATTAGGGTCGTCACCTGGAGGA
TGAAGGATTGATATGCAGACACGCCCATCCGGATAGACATTAGGATGCCA
AATCTCTGTTGTAAACTTCACTGTAGGTGGGCTATTAGGGTAGTTTGATG
GAAAGCTCATAATGGCATTGAAAAATCCCCCCTCATAAAGAGTATCAGGT
GGTCCAATAATTGTAACACTCCATTCAAAGATATTTGTCTCATCCACCAA
CCCGGCAGAAAACCCAGCAACAGGGTTCTTACAAAGATCTTTTAGTTGTT
TTTGCAAGAGGAGACTTGCCTGAGATGCCGCCATGATTTTAGTAGAGAGA
GAGAGCTGG
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