CX047674

Overview
NameCX047674
Unique NameCX047674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length270
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: SUI1_SCHPO (Protein translation factor sui1 OS=Schizosaccharomyces pombe GN=sui1 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.412e-17
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQGL +EF   +IL+ LKK+F CNGT+V+D +LG+VIQLQGDQR  V  FL Q   ++K++IK+HGF
Sbjct:   40 LTTVQGLPREFDQKRILRALKKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: SUI1_YEAST (Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces cerevisiae GN=SUI1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.110e-17
Identity = 38/70 (54.29%), Postives = 55/70 (78.57%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQG+ +E+   +ILK LKK+F CNG +V+DPE+G++IQLQGDQR  V  F++    ++K++IK+HGF
Sbjct:   39 LTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108          
BLAST of CX047674 vs. ExPASy Swiss-Prot
Match: SUI1_ASHGO (Protein translation factor SUI1 OS=Ashbya gossypii GN=SUI1A PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.750e-16
Identity = 37/70 (52.86%), Postives = 53/70 (75.71%), Query Frame = -1
Query:   58 LTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 267
            LTTVQG+ +E+   +ILK L+K+F CNG +V+D E+G++IQLQGDQR  V  FL+    + K++IK+HGF
Sbjct:   39 LTTVQGIPEEYDLKRILKVLRKDFGCNGNMVKDDEMGEIIQLQGDQRAKVCEFLITQLAIPKKNIKIHGF 108          
The following BLAST results are available for this feature:
BLAST of CX047674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_SCHPO1.412e-1760.00Protein translation factor sui1 OS=Schizosaccharom... [more]
SUI1_YEAST4.110e-1754.29Eukaryotic translation initiation factor eIF-1 OS=... [more]
SUI1_ASHGO7.750e-1652.86Protein translation factor SUI1 OS=Ashbya gossypii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15G12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15G12-N24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047674 ID=CX047674; Name=CX047674; organism=Citrus sinensis; type=EST; length=270bp
CTGCACTGACGAACGCGGGTCACCAAATGTGCAGAAACGGAAGTTGCTGT
TTACTTAAAAGCCATGCATTTTGATATGTTCCTTCTTCACAATCCCAGCC
TGAACAAGGAACGTAGATACATTCTTCCGCTGGTCACCTTGGAGTTGAAT
GACCTGTCCTAGTTCAGGATCCTGGACCACTGTTCCATTGCAGCAAAATT
CCTTTTTGAGGTCCTTGAGGATTTTGTTGTAACTAAATTCTTTCTTCAAC
CCCTGGACAGTTGTCAGCCT
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