CX047649

Overview
NameCX047649
Unique NameCX047649
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047649 vs. ExPASy Swiss-Prot
Match: PSBI_LEPTE (Photosystem II reaction center protein I OS=Leptosira terrestris GN=psbI PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.355e-11
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:   49 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR 150
            MLTLK+FVYTVV FFVSLF+FGFLSNDPGRNP R
Sbjct:    1 MLTLKIFVYTVVTFFVSLFVFGFLSNDPGRNPSR 34
[Close]
BLAST of CX047649 vs. ExPASy Swiss-Prot
Match: PSBI_PSEAK (Photosystem II reaction center protein I OS=Pseudendoclonium akinetum GN=psbI PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.703e-11
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:   49 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR 150
            MLTLK+FVYTVV FFVSLFIFGFLSNDPGRNP +
Sbjct:    1 MLTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPNQ 34
The following BLAST results are available for this feature:
BLAST of CX047649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PSBI_LEPTE4.355e-1188.24Photosystem II reaction center protein I OS=Leptos... [more]
PSBI_PSEAK9.703e-1188.24Photosystem II reaction center protein I OS=Pseude... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15F05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15F05-L10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047649 ID=CX047649; Name=CX047649; organism=Citrus sinensis; type=EST; length=395bp
CTATTCTCTTTTTCCTTTTCCCCAAAAACCTGATTTGGAGATTGTGTAAT
GCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCTTTGTTTCGC
TCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAATCCCGGACGC
GAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATAAACGTTCTT
AGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAAAGTGTTCGC
TAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACGGAAAGAGAG
GGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTAGCAATCCGA
CGCTTTAATCCACTTAGCCATCTCTCCTAATTGAAAATAAAAAAA
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