CX047646

Overview
NameCX047646
Unique NameCX047646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_SACOF (Cytochrome b6 OS=Saccharum officinarum GN=petB PE=3 SV=1)

HSP 1 Score: 400.979 bits (1029), Expect = 4.720e-111
Identity = 198/202 (98.02%), Postives = 199/202 (98.51%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAF+SVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHF MIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_SACHY (Cytochrome b6 OS=Saccharum hybrid GN=petB PE=3 SV=2)

HSP 1 Score: 400.979 bits (1029), Expect = 4.720e-111
Identity = 198/202 (98.02%), Postives = 199/202 (98.51%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAF+SVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHF MIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_ATRBE (Cytochrome b6 OS=Atropa belladonna GN=petB PE=3 SV=1)

HSP 1 Score: 400.979 bits (1029), Expect = 4.720e-111
Identity = 198/202 (98.02%), Postives = 199/202 (98.51%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHF MIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_PIPCE (Cytochrome b6 OS=Piper cenocladum GN=petB PE=3 SV=1)

HSP 1 Score: 400.593 bits (1028), Expect = 6.165e-111
Identity = 197/202 (97.52%), Postives = 198/202 (98.02%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGV+LAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS SVGQSTLTRFYSLHTFVLPLLTAVFMLMHF MIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVILAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSTSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFSMIRKQGISGPL 215
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_PHAAO (Cytochrome b6 OS=Phalaenopsis aphrodite subsp. formosana GN=petB PE=3 SV=1)

HSP 1 Score: 400.593 bits (1028), Expect = 6.165e-111
Identity = 197/202 (97.52%), Postives = 199/202 (98.51%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAF+SVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIP+IGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHF MIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPIIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_NICTO (Cytochrome b6 OS=Nicotiana tomentosiformis GN=petB PE=3 SV=1)

HSP 1 Score: 400.593 bits (1028), Expect = 6.165e-111
Identity = 197/202 (97.52%), Postives = 199/202 (98.51%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQ+GYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHF MIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQVGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_NICSY (Cytochrome b6 OS=Nicotiana sylvestris GN=petB PE=3 SV=1)

HSP 1 Score: 400.593 bits (1028), Expect = 6.165e-111
Identity = 197/202 (97.52%), Postives = 199/202 (98.51%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQ+GYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHF MIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQVGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_MARPO (Cytochrome b6 OS=Marchantia polymorpha GN=petB PE=3 SV=1)

HSP 1 Score: 400.593 bits (1028), Expect = 6.165e-111
Identity = 194/202 (96.04%), Postives = 199/202 (98.51%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAF+SVQYIMTEVNFGWLIRSVHRWSASMMVLM ILH+FRVYLTGGFKKPRELTWVTGV+LAVLT SFGVTGYSLPWDQIGYWAVKIVTGVPEAIP+IGSPLVELLRGS SVGQSTLTRFYSLHTFVLPLLTA+FMLMHFLMIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFSSVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHIFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPIIGSPLVELLRGSVSVGQSTLTRFYSLHTFVLPLLTAIFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_KLEBI (Cytochrome b6 OS=Klebsormidium bilatum GN=petB PE=3 SV=1)

HSP 1 Score: 400.208 bits (1027), Expect = 8.052e-111
Identity = 194/202 (96.04%), Postives = 199/202 (98.51%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADD+TSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQY+MT+VNFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGV+LAVLT SFGVTGYSLPWDQ+GYWAVKIVTGVPEAIPVIGSPLVELLRGS SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQAIADDVTSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYLMTDVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQVGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_CALFG (Cytochrome b6 OS=Calycanthus floridus var. glaucus GN=petB PE=3 SV=1)

HSP 1 Score: 400.208 bits (1027), Expect = 8.052e-111
Identity = 198/202 (98.02%), Postives = 199/202 (98.51%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIF+CLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHF MIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFHCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215
The following BLAST results are available for this feature:
BLAST of CX047646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYB6_SACOF4.720e-11198.02Cytochrome b6 OS=Saccharum officinarum GN=petB PE=... [more]
CYB6_SACHY4.720e-11198.02Cytochrome b6 OS=Saccharum hybrid GN=petB PE=3 SV=... [more]
CYB6_ATRBE4.720e-11198.02Cytochrome b6 OS=Atropa belladonna GN=petB PE=3 SV... [more]
CYB6_PIPCE6.165e-11197.52Cytochrome b6 OS=Piper cenocladum GN=petB PE=3 SV=... [more]
CYB6_PHAAO6.165e-11197.52Cytochrome b6 OS=Phalaenopsis aphrodite subsp. for... [more]
CYB6_NICTO6.165e-11197.52Cytochrome b6 OS=Nicotiana tomentosiformis GN=petB... [more]
CYB6_NICSY6.165e-11197.52Cytochrome b6 OS=Nicotiana sylvestris GN=petB PE=3... [more]
CYB6_MARPO6.165e-11196.04Cytochrome b6 OS=Marchantia polymorpha GN=petB PE=... [more]
CYB6_KLEBI8.052e-11196.04Cytochrome b6 OS=Klebsormidium bilatum GN=petB PE=... [more]
CYB6_CALFG8.052e-11198.02Cytochrome b6 OS=Calycanthus floridus var. glaucus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15F03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15F03-L6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047646 ID=CX047646; Name=CX047646; organism=Citrus sinensis; type=EST; length=884bp
ATTCAGGCGATTGCAGATGATATAACTAGTAAATACGTTCCTCCTCATGT
CAACATATTTTATTGTCTGGGAGGAATTACGCTCACTTGTTTTTTAGTAC
AAGTAGCTACAGGGTTTGCTATGACTTTTTACTACCGCCCGACCGTTACT
GAGGCTTTTGCCTCTGTTCAATACATAATGACGGAAGTTAACTTCGGGTG
GTTAATTCGATCGGTTCATCGATGGTCGGCAAGTATGATGGTCCTAATGA
CAATCCTGCACGTATTTCGCGTGTATCTCACCGGGGGTTTTAAAAAACCT
CGCGAATTGACTTGGGTTACAGGTGTGGTTCTGGCTGTATTGACCGCATC
TTTTGGTGTAACAGGTTATTCTTTACCTTGGGACCAAATTGGATATTGGG
CAGTAAAAATTGTAACAGGCGTGCCCGAAGCAATTCCGGTAATAGGATCG
CCTTTGGTAGAGTTATTACGCGGAAGTGCTAGTGTGGGACAGTCCACTTT
GACTCGTTTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACTGCCG
TATTTATGTTAATGCATTTCCTAATGATACGTAAACAAGGTATTTCTGGC
CCTTTATAAAATTATACAAAATCTAGATTATAGCGATTTGTAATCAACCC
TTTATCTTATTGCTTGGGGGAGGAACAATAATATTTCATTGCTACAAATA
TGGATTATTGACAAAGAATAAGACATGGAGTTGGAAATTTCCCCTCAACT
CCATAATATTGGACTTTTTATTTGACATGAATGAAATGAATAGTTGACGG
GAATTCTCCGAAGAGAAAATGGATTATGGGAGTGTGTGACTTGAACTATT
GATTGGGCCGTGCAGAAATATGTCTTTAATCTGC
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