CX047646

Overview
NameCX047646
Unique NameCX047646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_STIHE (Cytochrome b6 OS=Stigeoclonium helveticum GN=petB PE=3 SV=1)

HSP 1 Score: 379.407 bits (973), Expect = 1.471e-104
Identity = 181/202 (89.60%), Postives = 191/202 (94.55%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDI+SKYVPPHVNIFYCLGGIT TCFLVQVATGFAMTFYYRPTV EAFASVQYIMTEVNFGWLIRS+HRWSASMMVLM ILHVFRV+LTGGFKKPRELTW TGV++AV T SFGVTGYSLPWDQ+GYWAVKIVTGVP+AIPV+G  +VELLRG   VGQ+TLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQAIADDISSKYVPPHVNIFYCLGGITFTCFLVQVATGFAMTFYYRPTVVEAFASVQYIMTEVNFGWLIRSIHRWSASMMVLMMILHVFRVWLTGGFKKPRELTWTTGVIMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIPVVGPTIVELLRGGVGVGQATLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_GRATL (Cytochrome b6 OS=Gracilaria tenuistipitata var. liui GN=petB PE=3 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 2.509e-104
Identity = 181/202 (89.60%), Postives = 192/202 (95.05%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYC+GGI  T FL+QVA+GFAMTFYYRPTV EAF+SV+YIMT+VNFGWLIRS+HRWSASMMVLM ILH+FRVYLTGGFKKPRELTWVTGV+LAVLT SFGVTGYSLPWDQIGYWAVKIVTGVPEAIPV+G  +VELLRG  SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCIGGIVFTSFLIQVASGFAMTFYYRPTVAEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHMFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGGSIVELLRGGVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_CHLVU (Cytochrome b6 OS=Chlorella vulgaris GN=petB PE=3 SV=1)

HSP 1 Score: 378.252 bits (970), Expect = 3.277e-104
Identity = 182/202 (90.10%), Postives = 190/202 (94.06%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQ+IADDI+SKYVPPHVNIFYC+GGIT TCFLVQVATGFAMTFYYRPTV EAFASVQYIMTEVNFGWLIRS+HRWSASMMVLM ILHV RVYLTGGFKKPRELTWVTGV++AV T SFGVTGYSLPWDQIGYWAVKIVTGVP+AIPV+G  LVELLRG   VGQSTLTRFYSLHTFVLPL TAVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQSIADDISSKYVPPHVNIFYCIGGITFTCFLVQVATGFAMTFYYRPTVAEAFASVQYIMTEVNFGWLIRSIHRWSASMMVLMMILHVCRVYLTGGFKKPRELTWVTGVIMAVCTVSFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVVGPALVELLRGGVGVGQSTLTRFYSLHTFVLPLATAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_CHLRE (Cytochrome b6 OS=Chlamydomonas reinhardtii GN=petB PE=1 SV=1)

HSP 1 Score: 377.481 bits (968), Expect = 5.589e-104
Identity = 179/202 (88.61%), Postives = 191/202 (94.55%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYC+GGIT TCFLVQVATGFAMTFYYRPTV EAFASVQYIMT+VNFGWLIRS+HRWSASMMVLM +LHVFRVYLTGGFK+PRELTWVTGV++AV T SFGVTGYSLPWDQ+GYWAVKIVTGVP+AIP +G  +VELLRG   VGQ+TLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCIGGITFTCFLVQVATGFAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVFRVYLTGGFKRPRELTWVTGVIMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIPGVGGFIVELLRGGVGVGQATLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_ACAM1 (Cytochrome b6 OS=Acaryochloris marina (strain MBIC 11017) GN=petB PE=3 SV=1)

HSP 1 Score: 377.481 bits (968), Expect = 5.589e-104
Identity = 177/202 (87.62%), Postives = 192/202 (95.05%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADD+T+KYVPPHVNIFYCLGG+TL CF++Q ATGFAMTFYYRPTVTEAF S+QYIMTEVNFGWLIRS+HRWSASMMVLM ILHVFRVYLTGGFKKPRELTW+TGVVLAV+T +FGVTGYSLPWDQ+GYWAVKIV+GVPEAIPV+GS +VELLRG  SVGQSTLTRFYSLHTFVLP L AVFML+HFLMIRKQGISGPL
Sbjct:   14 IQAIADDVTTKYVPPHVNIFYCLGGVTLVCFIIQFATGFAMTFYYRPTVTEAFNSIQYIMTEVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWITGVVLAVITVTFGVTGYSLPWDQVGYWAVKIVSGVPEAIPVVGSSIVELLRGGTSVGQSTLTRFYSLHTFVLPWLIAVFMLLHFLMIRKQGISGPL 215
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_EUGGR (Cytochrome b6 OS=Euglena gracilis GN=petB PE=1 SV=3)

HSP 1 Score: 376.326 bits (965), Expect = 1.245e-103
Identity = 179/202 (88.61%), Postives = 192/202 (95.05%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADD++SKYVPPHVNIFYCLGGIT TCF++QVATGFAMTFYYRPTVTEAF SV+YIM EVNFGWLIRS+HRWSASMMVLM ILHV RVYLTGGFKKPRELTWVTG++LA+LT SFGVTGYSLPWDQ+GYWAVKIVTGVPEAIP+IG+ +VELLRGS SVGQSTLTRFYSLHTFVLPLLTA FML HFLMIRKQGISGPL
Sbjct:   14 IQAIADDVSSKYVPPHVNIFYCLGGITFTCFIIQVATGFAMTFYYRPTVTEAFLSVKYIMNEVNFGWLIRSIHRWSASMMVLMMILHVCRVYLTGGFKKPRELTWVTGIILAILTVSFGVTGYSLPWDQVGYWAVKIVTGVPEAIPLIGNFIVELLRGSVSVGQSTLTRFYSLHTFVLPLLTATFMLGHFLMIRKQGISGPL 215
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_CHLPR (Cytochrome b6 OS=Chlorella protothecoides GN=petB PE=3 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 1.626e-103
Identity = 179/202 (88.61%), Postives = 190/202 (94.06%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQ+IADDI+SKYVPPHVNIFYC GGIT TCFLVQVATGFAMTFYYRPTV EAF SVQY+MT+VNFGWLIRS+HRWSASMMVLM ILH+FRVYLTGGFKKPRELTWVTGV++AV T SFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIG  L+ELLRG  +VGQSTLTRFYSLHTFVLPL TAVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQSIADDISSKYVPPHVNIFYCFGGITFTCFLVQVATGFAMTFYYRPTVAEAFTSVQYLMTQVNFGWLIRSIHRWSASMMVLMMILHIFRVYLTGGFKKPRELTWVTGVLMAVCTVSFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGQVLLELLRGGVAVGQSTLTRFYSLHTFVLPLFTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_PORPU (Cytochrome b6 OS=Porphyra purpurea GN=petB PE=3 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 8.071e-103
Identity = 178/202 (88.12%), Postives = 188/202 (93.07%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDI+SKYVPPHVNIFYCLGGI    FL+QVATGFAMTFYYRPTV EAF SV+YIMT+VNFGWLIRS+HRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGV+L VLT SFGVTGYSLPWDQIGYWAVKIVTGVP+A+PV+G  +VELLRG  SVGQ TLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQAIADDISSKYVPPHVNIFYCLGGIVFVSFLIQVATGFAMTFYYRPTVAEAFTSVEYIMTDVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVILGVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPDAVPVVGESIVELLRGGVSVGQGTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_THEEB (Cytochrome b6 OS=Thermosynechococcus elongatus (strain BP-1) GN=petB PE=3 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 1.054e-102
Identity = 178/202 (88.12%), Postives = 189/202 (93.56%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFL+Q ATGFAMTFYY+PTV EAFASVQYIM EVNFGWLIRS+H+WSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAV+T SFGVTGYSLPWDQ+GYWAVKIV+G+P AIPV+G  LVEL+RG  SVGQ+TLTRFYSLHTFVLP   AVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLIQFATGFAMTFYYKPTVAEAFASVQYIMNEVNFGWLIRSIHKWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVITVSFGVTGYSLPWDQVGYWAVKIVSGIPAAIPVVGDQLVELMRGGESVGQATLTRFYSLHTFVLPWSIAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX047646 vs. ExPASy Swiss-Prot
Match: CYB6_SYNEL (Cytochrome b6 OS=Synechococcus elongatus GN=petB PE=3 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 1.054e-102
Identity = 178/202 (88.12%), Postives = 189/202 (93.56%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFL+Q ATGFAMTFYY+PTV EAFASVQYIM EVNFGWLIRS+H+WSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAV+T SFGVTGYSLPWDQ+GYWAVKIV+G+P AIPV+G  LVEL+RG  SVGQ+TLTRFYSLHTFVLP   AVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLIQFATGFAMTFYYKPTVAEAFASVQYIMNEVNFGWLIRSIHKWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVITVSFGVTGYSLPWDQVGYWAVKIVSGIPAAIPVVGDQLVELMRGGESVGQATLTRFYSLHTFVLPWSIAVFMLMHFLMIRKQGISGPL 215
The following BLAST results are available for this feature:
BLAST of CX047646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYB6_STIHE1.471e-10489.60Cytochrome b6 OS=Stigeoclonium helveticum GN=petB ... [more]
CYB6_GRATL2.509e-10489.60Cytochrome b6 OS=Gracilaria tenuistipitata var. li... [more]
CYB6_CHLVU3.277e-10490.10Cytochrome b6 OS=Chlorella vulgaris GN=petB PE=3 S... [more]
CYB6_CHLRE5.589e-10488.61Cytochrome b6 OS=Chlamydomonas reinhardtii GN=petB... [more]
CYB6_ACAM15.589e-10487.62Cytochrome b6 OS=Acaryochloris marina (strain MBIC... [more]
CYB6_EUGGR1.245e-10388.61Cytochrome b6 OS=Euglena gracilis GN=petB PE=1 SV=... [more]
CYB6_CHLPR1.626e-10388.61Cytochrome b6 OS=Chlorella protothecoides GN=petB ... [more]
CYB6_PORPU8.071e-10388.12Cytochrome b6 OS=Porphyra purpurea GN=petB PE=3 SV... [more]
CYB6_THEEB1.054e-10288.12Cytochrome b6 OS=Thermosynechococcus elongatus (st... [more]
CYB6_SYNEL1.054e-10288.12Cytochrome b6 OS=Synechococcus elongatus GN=petB P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15F03_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15F03-L6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047646 ID=CX047646; Name=CX047646; organism=Citrus sinensis; type=EST; length=884bp
ATTCAGGCGATTGCAGATGATATAACTAGTAAATACGTTCCTCCTCATGT
CAACATATTTTATTGTCTGGGAGGAATTACGCTCACTTGTTTTTTAGTAC
AAGTAGCTACAGGGTTTGCTATGACTTTTTACTACCGCCCGACCGTTACT
GAGGCTTTTGCCTCTGTTCAATACATAATGACGGAAGTTAACTTCGGGTG
GTTAATTCGATCGGTTCATCGATGGTCGGCAAGTATGATGGTCCTAATGA
CAATCCTGCACGTATTTCGCGTGTATCTCACCGGGGGTTTTAAAAAACCT
CGCGAATTGACTTGGGTTACAGGTGTGGTTCTGGCTGTATTGACCGCATC
TTTTGGTGTAACAGGTTATTCTTTACCTTGGGACCAAATTGGATATTGGG
CAGTAAAAATTGTAACAGGCGTGCCCGAAGCAATTCCGGTAATAGGATCG
CCTTTGGTAGAGTTATTACGCGGAAGTGCTAGTGTGGGACAGTCCACTTT
GACTCGTTTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACTGCCG
TATTTATGTTAATGCATTTCCTAATGATACGTAAACAAGGTATTTCTGGC
CCTTTATAAAATTATACAAAATCTAGATTATAGCGATTTGTAATCAACCC
TTTATCTTATTGCTTGGGGGAGGAACAATAATATTTCATTGCTACAAATA
TGGATTATTGACAAAGAATAAGACATGGAGTTGGAAATTTCCCCTCAACT
CCATAATATTGGACTTTTTATTTGACATGAATGAAATGAATAGTTGACGG
GAATTCTCCGAAGAGAAAATGGATTATGGGAGTGTGTGACTTGAACTATT
GATTGGGCCGTGCAGAAATATGTCTTTAATCTGC
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