CX047645

Overview
NameCX047645
Unique NameCX047645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_NOSSP (Cytochrome b6 OS=Nostoc sp. (strain PCC 7906) GN=petB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.389e-13
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = -1
Query:  703 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 828
            SVGQ+TLTR+YS HTFVLP L AVFML HFLMIRKQGISGPL
Sbjct:  174 SVGQATLTRYYSAHTFVLPWLIAVFMLFHFLMIRKQGISGPL 215          
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_NOSP7 (Cytochrome b6 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=petB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.389e-13
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = -1
Query:  703 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 828
            SVGQ+TLTR+YS HTFVLP L AVFML HFLMIRKQGISGPL
Sbjct:  174 SVGQATLTRYYSAHTFVLPWLIAVFMLFHFLMIRKQGISGPL 215          
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_ANAVT (Cytochrome b6 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.389e-13
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = -1
Query:  703 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 828
            SVGQ+TLTR+YS HTFVLP L AVFML HFLMIRKQGISGPL
Sbjct:  174 SVGQATLTRYYSAHTFVLPWLIAVFMLFHFLMIRKQGISGPL 215          
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_ANASP (Cytochrome b6 OS=Anabaena sp. (strain PCC 7120) GN=petB PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.389e-13
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = -1
Query:  703 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 828
            SVGQ+TLTR+YS HTFVLP L AVFML HFLMIRKQGISGPL
Sbjct:  174 SVGQATLTRYYSAHTFVLPWLIAVFMLFHFLMIRKQGISGPL 215          
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_EMIHU (Cytochrome b6 OS=Emiliania huxleyi GN=petB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.201e-12
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = -1
Query:  703 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 828
            SVGQSTLTRFYS HTFVLP++ AV ML HF+MIRKQGISGPL
Sbjct:  174 SVGQSTLTRFYSAHTFVLPVVAAVLMLTHFVMIRKQGISGPL 215          
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_SYNY3 (Cytochrome b6 OS=Synechocystis sp. (strain PCC 6803) GN=petB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.568e-12
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = -1
Query:  703 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 828
            SVGQ+TLTRFYSLHTFVLP   AV +L+HFLMIRKQGISGPL
Sbjct:  181 SVGQATLTRFYSLHTFVLPWAIAVLLLLHFLMIRKQGISGPL 222          
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_GUITH (Cytochrome b6 OS=Guillardia theta GN=petB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.048e-12
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = -1
Query:  703 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 828
            SVGQ+TLTRFYS HTFVLP+  AV ML HFLMIRKQGISGPL
Sbjct:  174 SVGQATLTRFYSAHTFVLPVAAAVLMLTHFLMIRKQGISGPL 215          
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_CYACA (Cytochrome b6 OS=Cyanidium caldarium GN=petB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = -1
Query:  703 VGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 825
            VGQ+TLTRFYSLHT  LP L+ +F+L HFLMIRKQGISGPL
Sbjct:  175 VGQATLTRFYSLHTLFLPALSVIFLLAHFLMIRKQGISGPL 215          
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_HETTR (Cytochrome b6 OS=Heterocapsa triquetra GN=petB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.044e-11
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = -1
Query:  703 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 828
            SVGQ+TLTR YS+HTFVLPL+T V +++HF ++RKQGISGPL
Sbjct:  178 SVGQTTLTRLYSIHTFVLPLVTLVLLIVHFSLLRKQGISGPL 219          
BLAST of CX047645 vs. ExPASy Swiss-Prot
Match: CYB6_AMPOP (Cytochrome b6 OS=Amphidinium operculatum GN=petB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = -1
Query:  703 SVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 828
            SVGQ T TRFY  HTF+LPL+T   +L HFLMIRKQGISGPL
Sbjct:  178 SVGQPTXTRFYQAHTFILPLVTLALLLTHFLMIRKQGISGPL 219          
The following BLAST results are available for this feature:
BLAST of CX047645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
CYB6_NOSSP5.389e-1385.71Cytochrome b6 OS=Nostoc sp. (strain PCC 7906) GN=p... [more]
CYB6_NOSP75.389e-1385.71Cytochrome b6 OS=Nostoc punctiforme (strain ATCC 2... [more]
CYB6_ANAVT5.389e-1385.71Cytochrome b6 OS=Anabaena variabilis (strain ATCC ... [more]
CYB6_ANASP5.389e-1385.71Cytochrome b6 OS=Anabaena sp. (strain PCC 7120) GN... [more]
CYB6_EMIHU1.201e-1283.33Cytochrome b6 OS=Emiliania huxleyi GN=petB PE=3 SV... [more]
CYB6_SYNY31.568e-1283.33Cytochrome b6 OS=Synechocystis sp. (strain PCC 680... [more]
CYB6_GUITH2.048e-1283.33Cytochrome b6 OS=Guillardia theta GN=petB PE=3 SV=... [more]
CYB6_CYACA1.734e-1178.05Cytochrome b6 OS=Cyanidium caldarium GN=petB PE=3 ... [more]
CYB6_HETTR5.044e-1171.43Cytochrome b6 OS=Heterocapsa triquetra GN=petB PE=... [more]
CYB6_AMPOP8.604e-1173.81Cytochrome b6 OS=Amphidinium operculatum GN=petB P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15F03_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15F03-L6-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047645 ID=CX047645; Name=CX047645; organism=Citrus sinensis; type=EST; length=828bp
TCATGATCAAGAGCTTTCTGGGTCGTCTCAGCCCTTGTGATTCACCCTTA
TCCAAAAACAAAAAAAAAAAAAAGATCGAGCTGAGATTTTTCTTTTTCGC
GTACAAAGGATTTACTTGTTACTAATATAGTCTAGCCGCTGCTCTTCTTT
AGACCCCTTGTTTCACTCCGATAGTATCATAAATCGGGATCGGTGCAGAA
GAAATGAATGCATTTCCATACTATTAAGTAAGTAATCTAGAATCTAGCGA
AAACATAATCTAGATTATGCCACATCGCTTATTCTACTGGATCTTACGGA
GCCTGCTCATGCGCGGCATGCTTGGGGCTGATCATAGAAAAGATTCTTTT
CAATCGAACCAACCTATCCTCTCTATGGGGTGCCGGTTGGAACAAAGACA
CATTTGGTCGCGAATTCCAATGTAGCAGATTAAAGACATATTTCTGCACG
GCCCAATCAATAGTTCAAGTCACACACTCCCATAATCCATTTTCTCTTCG
GAGAATTCCCGTCAACTATTCATTTCATTCATGTCAAATAAAAAGTCCAA
TATTATGGAGTTGAGGGGAAATTTCCAACTCCATGTCTTATTCTTTGTCA
ATAATCCATATTTGTAGCAATGAAATATTATTGTTCCTCCCCCAAGCAAT
AAGATAAAGGGTTGATTACAAATCGCTATAATCTAGATTTTGTATAATTT
TATAAAGGGCCAGAAATACCTTGTTTACGTATCATTAGGAAATGCATTAA
CATAAATACGGCAGTAAGAAGAGGTAATACAAAAGTGTGTAAACTATAAA
AACGAGTCAAAGTGGACTGTCCCACACT
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