CX047636

Overview
NameCX047636
Unique NameCX047636
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047636 vs. ExPASy Swiss-Prot
Match: IF5A_SULIK (Translation initiation factor 5A OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.825e-11
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  129 GTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 452
            G ++   Y+VI G PC+VVEV+ +KTGKHG AK + V I +F+G K   + P     +VP + +   Q+I    D    +  E   T  ++  PT++ L S+I+   E
Sbjct:    9 GELKVGSYVVIDGEPCRVVEVTKAKTGKHGSAKANVVAIGVFSGAKKTLMAPVDQQVEVPIIEKHIGQIIADMGDKIQVMDLETYET-FEIEKPTEDELASKIRPNAE 115          
BLAST of CX047636 vs. ExPASy Swiss-Prot
Match: IF5A_SULIA (Translation initiation factor 5A OS=Sulfolobus islandicus (strain M.16.27) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.825e-11
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  129 GTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 452
            G ++   Y+VI G PC+VVEV+ +KTGKHG AK + V I +F+G K   + P     +VP + +   Q+I    D    +  E   T  ++  PT++ L S+I+   E
Sbjct:    9 GELKVGSYVVIDGEPCRVVEVTKAKTGKHGSAKANVVAIGVFSGAKKTLMAPVDQQVEVPIIEKHIGQIIADMGDKIQVMDLETYET-FEIEKPTEDELASKIRPNAE 115          
BLAST of CX047636 vs. ExPASy Swiss-Prot
Match: IF5A_SULSO (Translation initiation factor 5A OS=Sulfolobus solfataricus GN=eif5a PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.302e-11
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  129 GTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFE 452
            G ++   Y+VI G PC+VVEV+ +KTGKHG AK + V I +F+G K   + P     +VP + +   Q+I    +    +  E+  T  ++  PT++ L S+IK   E
Sbjct:    9 GELKVGSYVVIDGEPCRVVEVTKAKTGKHGSAKANVVAIGVFSGAKKTLMAPVDQQVEVPIIEKHIGQIIADMGNKIQVMDLESYET-FEIEKPTEDELASKIKPNAE 115          
BLAST of CX047636 vs. ExPASy Swiss-Prot
Match: IF5A_METJA (Translation initiation factor 5A OS=Methanocaldococcus jannaschii GN=eif5a PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.302e-11
Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 3
Query:  129 GTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDL 467
            G+++   Y++I G PC++V++S SK GKHG AK   VGI IF   K E + P+S   +VP + R   Q++ I  D  V ++  +  T + L LP  E +     +G E G ++
Sbjct:   10 GSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLAIMGD-MVQIM--DLQTYETLELPIPEGI-----EGLEPGGEV 114          
The following BLAST results are available for this feature:
BLAST of CX047636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
IF5A_SULIK4.825e-1135.19Translation initiation factor 5A OS=Sulfolobus isl... [more]
IF5A_SULIA4.825e-1135.19Translation initiation factor 5A OS=Sulfolobus isl... [more]
IF5A_SULSO6.302e-1135.19Translation initiation factor 5A OS=Sulfolobus sol... [more]
IF5A_METJA6.302e-1135.40Translation initiation factor 5A OS=Methanocaldoco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15E06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15E06-J12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047636 ID=CX047636; Name=CX047636; organism=Citrus sinensis; type=EST; length=811bp
TTCTAACAAAATTTGGTTGTCGAAGCTCTAATTGTGAATCGCAGGAACCA
GACGATATGTCGGACGAAGAGCACCACTTTGAGTCGAAGGCCGACGCCGG
CGCCTCCAAGACATTTCCTCAGCAGGCCGGAACGATTCGCAAAAACGGTT
ATATCGTCATCAAAGGTCGTCCTTGCAAGGTTGTTGAGGTTTCAACTTCC
AAGACTGGAAAGCACGGTCATGCTAAGTGTCACTTTGTAGGAATTGACAT
CTTCAATGGCAAGAAGCTTGAGGATATTGTTCCCTCTTCCCACAACTGTG
ATGTTCCTCATGTCACTCGCACTGACTACCAGCTGATTGATATCTCTGAG
GATGGATTTGTTAGCCTGCTGACTGAGAATGGCAATACCAAGGATGACCT
GAGACTTCCAACTGATGAAAATCTGCTTTCACAGATCAAGGATGGATTTG
AGAGTGGGAAAGATCTGGTTGTCTCAGTTCAGTGTGCTATGGGAGAGGAG
CAGATCAATGCCCTGAAGGACATTGGCCCCAAGTAAAAGACTTTTTGCTT
GATCGAGAATGCAGATTGCTGAAAGCTGTGGGAAGGTGGATAGTAGTGTA
GCTTACTGGTGTCCGGTTTCAAGATGAATGTCATCATTTCATATAAAATG
ACTCTTACCATATTATTAATTGTTTTCTATCGACAATATTTTTATTCTGT
TTGATTGCTTGAAAGTTGAAACATGGTTGTTCTCGGTGTGCAGAAGTTGT
ATCCGCCAACGTGACTGTATATACACTTCGAAGCACCTTTTGGTTGTTTC
AAACATGCCTT
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