CX047623

Overview
NameCX047623
Unique NameCX047623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHSA_IPOPL (Chalcone synthase A (Fragment) OS=Ipomoea platensis GN=CHSA PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.164e-17
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 3
Query:    6 GISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 203
            GISDWNSIFWI HPGG AILD+VE           A+R VLSEYGN++SACVLFILD +R+KS ++
Sbjct:  295 GISDWNSIFWILHPGGNAILDRVEERLGLGPEKLRASRDVLSEYGNLTSACVLFILDLVRRKSKKQ 360          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHSB_IPOCO (Chalcone synthase B (Fragment) OS=Ipomoea cordatotriloba GN=CHSB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.820e-17
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 3
Query:    6 GISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 203
            GISDWNSIFW+ HPGG AI+D VE           A+R VLS YGN++SACVLFILDE+RKKS ++
Sbjct:  297 GISDWNSIFWVLHPGGNAIVDGVEETLGLAPEKLRASRDVLSGYGNLTSACVLFILDEVRKKSKKD 362          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHSC_IPOPU (Chalcone synthase C (Fragment) OS=Ipomoea purpurea GN=CHSC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.476e-13
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 3
Query:    6 GISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLF 167
            GISDWNSIFWI HPGG AILD VE           A+R VLS+YGN++SACVLF
Sbjct:  297 GISDWNSIFWILHPGGNAILDGVEEKLGLEPEKLRASRDVLSQYGNLTSACVLF 350          
BLAST of CX047623 vs. ExPASy Swiss-Prot
Match: CHSA_IPONI (Chalcone synthase A (Fragment) OS=Ipomoea nil GN=CHSA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.026e-11
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 3
Query:    6 GISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSAC 158
            GISDWNSIFWI HPGG AILD+VE           A+R VLSE GN++SAC
Sbjct:  294 GISDWNSIFWILHPGGIAILDRVEEKLGLEPEKLRASRDVLSESGNLTSAC 344          
The following BLAST results are available for this feature:
BLAST of CX047623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHSA_IPOPL2.164e-1763.64Chalcone synthase A (Fragment) OS=Ipomoea platensi... [more]
CHSB_IPOCO4.820e-1762.12Chalcone synthase B (Fragment) OS=Ipomoea cordatot... [more]
CHSC_IPOPU2.476e-1364.81Chalcone synthase C (Fragment) OS=Ipomoea purpurea... [more]
CHSA_IPONI3.026e-1162.75Chalcone synthase A (Fragment) OS=Ipomoea nil GN=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15D11_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15D11-H22-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047623 ID=CX047623; Name=CX047623; organism=Citrus sinensis; type=EST; length=491bp
CGCTTGGCATCAGCGACTGGAACTCGATATTCTGGATCGCTCACCCCGGT
GGGCCCGCAATTCTGGACCAAGTGGAGTCTAAACTGGGCCTCAAAGGGGA
GAAGCTGAAGGCCACACGTCAAGTGTTGAGTGAGTACGGTAACATGTCAA
GCGCTTGTGTCTTGTTCATCCTTGACGAGATGAGAAAGAAGTCTGTTGAG
GAAGCGAAAGCCACCACCGGCGAAGGGCTTGATTGGGGTGTGCTGTTCGG
GTTCGGGCCGGGGCTCACCGTCGAGACCGTTGTGCTGCACAGTGTCCCCA
TCAAAGCTTGAAGTGAGAACTCCATCAGTATGTTTAGTAGTTCAGTAACT
TTATGTTGTATGCTTTCACAGTTGAGTTATTGGTTGATCGTGTGAAGGTT
TAGTTTTGTCAATTGAGTTTAAGGCATCGTGCCTTTTCTCTTATGACGTC
ACCAAACCTGGGCAACGCTTTGTGTTTATGCATAAATTCTT
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