CX047618

Overview
NameCX047618
Unique NameCX047618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047618 vs. ExPASy Swiss-Prot
Match: EF1GB_XENLA (Elongation factor 1-gamma-B OS=Xenopus laevis GN=eef1g-B PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.497e-21
Identity = 53/152 (34.87%), Postives = 89/152 (58.55%), Query Frame = 3
Query:   45 SKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIMDECY--DMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCF 494
            S  I+DE+KR YSN  T    VA+  FW+ ++ EG+S+W+ +YK+ +E T +F++ N + G  QR+D  RK AF  +++ G+     + G+W+FRG ++  F + E +  D E Y W+K+    E+  E    M++++  +EGE     K F
Sbjct:  286 SSFIMDEFKRKYSNEDT--LTVALPYFWEHFEKEGWSIWYAEYKFPEELTQTFMSCNLITGMFQRLDKLRKTAFASVILFGTNNNSTISGVWVFRGHDL-AFTLSEDWQIDYESYTWRKL----ESDSEECRTMVKEYFAWEGEFKHVGKAF 430          
BLAST of CX047618 vs. ExPASy Swiss-Prot
Match: EF1G_CAEEL (Probable elongation factor 1-gamma OS=Caenorhabditis elegans GN=F17C11.9 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.261e-21
Identity = 48/149 (32.21%), Postives = 86/149 (57.72%), Query Frame = 3
Query:   54 ILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIP-QFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 497
            +LD +KR YSN  T  +  AI  FW+ +D + +S+W C+YKY ++ T++F++ N + G  QR++  +K AF  M++ G++    + G+W+++G ++  +   D   D E Y W K+D   +A K+ V++ +     F G+     K FK
Sbjct:  252 VLDNFKRSYSNEDTATK--AIPHFWENFDADNWSIWKCEYKYPEDLTLAFMSCNLINGMYQRLEKLKKNAFASMILFGTDNNSTISGIWVWKGDKLAFELSPDWQVDYESYTWTKLDAKSDATKKEVNEYLMWEGDFGGKKFNQGKIFK 398          
BLAST of CX047618 vs. ExPASy Swiss-Prot
Match: EF1G_DROME (Elongation factor 1-gamma OS=Drosophila melanogaster GN=Ef1gamma PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 3
Query:   60 DEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPQFIM-DECYDMELYDWKKVDINDEAQKERVSQ 437
            D++KR+YSN        +I  F+D +D E YS+WF +YKYN+E +  F++ N + G  QR+D  RK AF  + + G +    + G+W++RGQ++   +  D   D E+YDWKK+D   E  K+ V+Q
Sbjct:  287 DDFKRVYSNED---EAKSIPYFFDKFDAENYSIWFGEYKYNEELSKVFMSCNLITGMFQRLDKMRKAAFASVCLFGEDGNSTISGIWVWRGQDLAFTLSPDWQIDYEVYDWKKLDAKSEETKKLVTQ 410          
BLAST of CX047618 vs. ExPASy Swiss-Prot
Match: EF1G_ARTSA (Elongation factor 1-gamma OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.606e-20
Identity = 46/128 (35.94%), Postives = 76/128 (59.38%), Query Frame = 3
Query:   57 LDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIP-QFIMDECYDMELYDWKKVDINDEAQKERVSQ 437
            +D++KR YSN   N    +I  FW+ +D E YS+W+ +YKY DE    +++ N + G  QR++  RK AF  + + G +    + G+W++RGQ++  +   D   D E YDWKK+D + +  K+ V+Q
Sbjct:  285 MDDFKRFYSN---NEETKSIPYFWEKFDKENYSIWYSEYKYQDELAKVYMSCNLITGMFQRIEKMRKQAFASVCVFGEDNDSSISGIWVWRGQDLAFKLSPDWQIDYESYDWKKLDPDAQETKDLVTQ 409          
BLAST of CX047618 vs. ExPASy Swiss-Prot
Match: EF1G_SCHPO (Elongation factor 1-gamma OS=Schizosaccharomyces pombe GN=tef3 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.375e-18
Identity = 53/149 (35.57%), Postives = 80/149 (53.69%), Query Frame = 3
Query:   57 LDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKY-NDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQE-IPQFIMDECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 497
            ++E+KR+YSN  T  R  A+  F++ +DPE YS+W  DY Y  D     F+T N +GGF QR++ +RKY FG  ++IG      + G ++ +G + +P F  D   D   Y + K+DIN    K  +       +P EG  + D K  K
Sbjct:  265 IEEYKRVYSNQDT--RSGALPWFFEHFDPENYSVWKVDYSYPEDLKQPVFMTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYVPAF--DVAPDWGSYTFTKLDINKPEDKAFIEDAWAWDKPIEGREVADGKVCK 409          
The following BLAST results are available for this feature:
BLAST of CX047618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
EF1GB_XENLA2.497e-2134.87Elongation factor 1-gamma-B OS=Xenopus laevis GN=e... [more]
EF1G_CAEEL3.261e-2132.21Probable elongation factor 1-gamma OS=Caenorhabdit... [more]
EF1G_DROME1.619e-2038.58Elongation factor 1-gamma OS=Drosophila melanogast... [more]
EF1G_ARTSA3.606e-2035.94Elongation factor 1-gamma OS=Artemia salina PE=1 S... [more]
EF1G_SCHPO3.375e-1835.57Elongation factor 1-gamma OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15D02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15D02-H4-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047618 ID=CX047618; Name=CX047618; organism=Citrus sinensis; type=EST; length=725bp
CACCAAAGCCCAAGCCAAAGAATCCACTTGACCTTTTGCCTCCCAGCAAG
ATGATTTTGGATGAGTGGAAGAGGTTGTACTCAAACACAAAGACCAACTT
TCGTGAGGTTGCCATTAAAGGATTTTGGGACATGTATGATCCGGAGGGCT
ACTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAGAATACAGTCTCA
TTTGTGACTTTGAACAAAGTGGGCGGATTCCTGCAGCGAATGGACTTGGC
TCGTAAGTATGCTTTTGGGAAGATGCTGATTATTGGCTCGGAGCCACCTT
TCAAGGTAAAGGGTTTGTGGCTTTTCCGTGGACAAGAGATTCCTCAATTT
ATAATGGACGAGTGTTACGACATGGAGTTGTATGATTGGAAGAAGGTGGA
CATCAATGATGAAGCTCAGAAGGAGCGTGTAAGCCAGATGATCGAAGATC
ATGAACCTTTCGAGGGTGAGGCCTTGTTAGATGCCAAGTGCTTCAAGTGA
GATCATCCAGACGGACCAGACCGGAGAAGTAGCTGGTGTGTGTGTGTAAT
GCTGTTGCAATCATTTAAGTTTTCTAATTTTTCATCTTTAGTTTTGTGCT
GTTAGCAAATTGACCCTATTTAAGCATTCAATTGACTTTGATTTAAATAC
ATCAGAACTTTCTAGTTAATTTTCATATTACATTCATGTTTTTGTTTAAA
GTCAATAATGTTGGGATTACAAGGG
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