CX047615

Overview
NameCX047615
Unique NameCX047615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FADS2_RAT (Fatty acid desaturase 2 OS=Rattus norvegicus GN=Fads2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.420e-18
Identity = 66/231 (28.57%), Postives = 104/231 (45.02%), Query Frame = 1
Query:  202 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYFVQDFEV---------------SEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESV-W---AHLGSG--------MLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHI 813
            EE++ HN   D W+ I  KVY+VT+W+++HPGG   + + +G+D TDAF A+H       LD  F G F++   +               S+I++D+R L        +F K  H          L F +++  ++  ES+ W   ++ G+G         +L     Q+ ++ HD GH  V     +N I        L G S  WW   H  HH   N    DPD++ +
Sbjct:   24 EEIQKHNLRTDRWLVIDRKVYNVTKWSQRHPGGHRVIGHYSGEDATDAFRAFH-------LDLDFVGKFLKPLLIGELAPEEPSLDRGKSSQITEDFRALKKTAEDMNLF-KTNH----------LFFFLLLSHIIVMESIAWFILSYFGNGWIPTVITAFVLATSQAQAGWLQHDYGHLSVYKKSIWNHIVHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDIKSL 236          
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FADS2_MOUSE (Fatty acid desaturase 2 OS=Mus musculus GN=Fads2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.391e-18
Identity = 64/231 (27.71%), Postives = 103/231 (44.59%), Query Frame = 1
Query:  202 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYFVQDFEV---------------SEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCES----VWAHLGSG--------MLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDLQHI 813
            EE++ HN   D W+ I  KVY+VT+W+++HPGG   + + +G+D TDAF A+H       LD  F G F++   +               S+I++D+R L        +F K  H          L F +++  ++  ES    + ++ G+G         +L     Q+ ++ HD GH  V     +N +        L G S  WW   H  HH   N    DPD++ +
Sbjct:   24 EEIQKHNLRTDRWLVIDRKVYNVTKWSQRHPGGHRVIGHYSGEDATDAFRAFH-------LDLDFVGKFLKPLLIGELAPEEPSLDRGKSSQITEDFRALKKTAEDMNLF-KTNH----------LFFFLLLSHIIVMESLAWFILSYFGTGWIPTLVTAFVLATSQAQAGWLQHDYGHLSVYKKSIWNHVVHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDIKSL 236          
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FADS3_MOUSE (Fatty acid desaturase 3 OS=Mus musculus GN=Fads3 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.569e-17
Identity = 55/210 (26.19%), Postives = 97/210 (46.19%), Query Frame = 1
Query:  202 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFVQD------FEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVW-AHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDL 804
            E++R H+   D W+ I+ +VYD++ WA++HPGG   + +   +D TDAF A+H    +  ++L  L  G    +       + +++ +D+R L        +FE      +  L  +  M ++    +      W + + + ++L     Q   + HD GH  + T  ++N +AQ      L G S  WW + H  HH   N    DPD+
Sbjct:   30 EQIRQHDLPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHGAEDATDAFHAFHQDLHFVRKFLKPLLIGELAPEEPSQDGAQNAQLIEDFRALRQAAEDMKLFEADTTFFALLLGHILAMELLAWLIIYLLGPGWVSSILAALILAISQAQCWCLQHDLGHASIFTKSRWNHVAQQFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDV 239          
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FADS1_MOUSE (Fatty acid desaturase 1 OS=Mus musculus GN=Fads1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.049e-17
Identity = 60/239 (25.10%), Postives = 110/239 (46.03%), Query Frame = 1
Query:  130 LPPQHFPIFQSAALMEAEKKYITAEELRTHNKAE-DLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYH--PGTAWQYLDKLFTGYFVQD---FEVSE---ISKDYRRLYIEFAKQGMFEKKQ-----HVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDL 804
            + P   P    A+    + +Y T EE+   +  E + W+ I  KVY++++++++HPGG   + + AGQD TD F+A+H   G   +Y++ L  G    +   FE ++   ++ ++R L     + G+ +        ++    L  VA    + ++G     S+   +   +LL  +  Q+ ++ HD GH  V  +  +N +        L G   +WW   H  HH   N    DPD+
Sbjct:    1 MAPDPVPTPGPASAQLRQTRYFTWEEVAQRSGREKERWLVIDRKVYNISDFSRRHPGGSRVISHYAGQDATDPFVAFHINKGLVRKYMNSLLIGELAPEQPSFEPTKNKALTDEFRELRATVERMGLMKANHLFFLVYLLHILLLDVAAWLTLWIFGT----SLVPFILCAVLLSTVQAQAGWLQHDFGHLSVFGTSTWNHLLHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRKDPDI 235          
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FADS3_HUMAN (Fatty acid desaturase 3 OS=Homo sapiens GN=FADS3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.676e-17
Identity = 57/210 (27.14%), Postives = 96/210 (45.71%), Query Frame = 1
Query:  202 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFV-----QDFEV-SEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLG-SGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDL 804
            E++R H++  D W+ I+ +VYD++ WA++HPGG   + +   +D TDAF A+H    +  ++L  L  G        QD  + +++ +D+R L+       +F+      +  L  +  M V+    +      W     +  +L     QS  + HD GH  +     +N +AQ      L G S  WW + H  HH   N    DPD+
Sbjct:   26 EQIRAHDQPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHGAEDATDAFRAFHQDLNFVRKFLQPLLIGELAPEEPSQDGPLNAQLVEDFRALHQAAEDMKLFDASPTFFAFLLGHILAMEVLAWLLIYLLGPGWVPSALAAFILAISQAQSWCLQHDLGHASIFKKSWWNHVAQKFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDV 235          
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FADS1_RAT (Fatty acid desaturase 1 OS=Rattus norvegicus GN=Fads1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.564e-17
Identity = 57/222 (25.68%), Postives = 105/222 (47.30%), Query Frame = 1
Query:  181 EKKYITAEELRTHNKAE-DLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYH--PGTAWQYLDKLFTGYFVQD---FEVSE---ISKDYRRLYIEFAKQGMFEKKQ-----HVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDL 804
            + +Y T EE+   +  E + W+ I  KVY++++++++HPGG   + + AGQD TD F+A+H   G   +Y++ L  G    +   FE ++   ++ ++R L     + G+ +        ++    L  VA    + ++G     S+       +LL  +  Q+ ++ HD GH  V ++  +N +        L G   +WW   H  HH   N    DPD+
Sbjct:   18 QMRYFTWEEVAQRSGREKERWLVIDRKVYNISDFSRRHPGGSRVISHYAGQDATDPFVAFHINKGLVRKYMNSLLIGELAPEQPSFEPTKNKALTDEFRELRATVERMGLMKANHLFFLFYLLHILLLDVAAWLTLWIFGT----SLVPFTLCAVLLSTVQAQAGWLQHDFGHLSVFSTSTWNHLVHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRKDPDI 235          
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FADS3_RAT (Fatty acid desaturase 3 OS=Rattus norvegicus GN=Fads3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 55/210 (26.19%), Postives = 97/210 (46.19%), Query Frame = 1
Query:  202 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFVQD------FEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVW-AHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDL 804
            E++R H+   D W+ I+ +VYD++ WA++HPGG   + + + +D TDAF A+H    +  ++L  L  G    +       + +++ +D+R L        +FE      +  L  +  M ++    V      W + + + ++L     Q   + HD GH  +    ++N +AQ      L G S  WW + H  HH   N    DPD+
Sbjct:   30 EQIRQHDLPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHSAEDATDAFHAFHQDLHFVRKFLKPLLIGELAPEEPSQDGAQNAQLIEDFRALRQAAEDMKLFEADTTFFALLLGHILAMELLAWLLVYLLGPGWVSSVLAALILAISQAQCWCLQHDLGHASIFPKSRWNHVAQQFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDV 239          
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FAD2L_HUMAN (Fatty acid desaturase 2-like protein OS=Homo sapiens PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.243e-14
Identity = 62/216 (28.70%), Postives = 93/216 (43.06%), Query Frame = 1
Query:  205 ELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHP--GTAWQYLDKLFTGYFV------QDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSG----MLLGFL----WIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTHNAHHIACNSLDYDPDL 804
            E++ HN   D  + I  KVY+V+ WA +HPGG   L + AG+D  D F A HP       YL  L  G         +  + S++ KD++ L+       MF          L    L FV ++   +    +  H GSG    M + FL       S+++ HD+GH  +    K+N +        L G+S   W + H   H+  N    DPD+
Sbjct:   63 EIQRHNHEADQLV-INCKVYNVSSWADRHPGGHQVLNHCAGEDAMDVFRAMHPELDIVQLYLKPLLIGELAPGEPSQERHKNSQLVKDFQELWSIAEAMNMFHAN-------LGFFFLHFVQILILEVLAWLIVYHFGSGWPVTMFISFLLTISQASSSFLQHDAGHLSIFRKSKWNHVVHKFVMCHLKGLSADRWNYWHFEQHVKPNIYPKDPDI 270          
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FAD5B_DICDI (Delta(5) fatty acid desaturase B OS=Dictyostelium discoideum GN=fadB PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.616e-14
Identity = 63/220 (28.64%), Postives = 97/220 (44.09%), Query Frame = 1
Query:  187 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQY--LDKLFTGY--------FVQDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVY--GVLCCESVWAHLGSGMLLGFL-WIQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTH-NAHHIACNSLDYDPDL 804
            K  T +E+  HN+  DLWI + GKVY++T+W   HPGG+  LL  AG+D T+ F +YHP T   Y  + +   GY        +V+  E     K   R + + + Q   + K  V       +  +F+ V Y       +  W +    +L G    +   +  HD+ H  +  +P   KI    + +   G S   W   H   HH+  N  + DPDL
Sbjct:   13 KLYTWDEVSKHNQKNDLWIIVDGKVYNITKWVPLHPGGEDILLLSAGRDATNLFESYHPMTDKHYSLIKQYEIGYISSYEHPKYVEKSEFYSTLKQRVRKHFQTSSQ---DPKVSVGVFTRMVLIYLFLFVTYYLSQFSTDRFWLNCIFAVLYGVANSLFGLHTMHDACHTAITHNPMTWKILG-ATFDLFAGASFYAWCHQHVIGHHLYTNVRNADPDL 228          
BLAST of CX047615 vs. ExPASy Swiss-Prot
Match: FAD5A_DICDI (Delta(5) fatty acid desaturase A OS=Dictyostelium discoideum GN=fadA PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.052e-13
Identity = 65/220 (29.55%), Postives = 95/220 (43.18%), Query Frame = 1
Query:  187 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHP--GTAWQYLDKLFTGY--------FVQDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAY---VGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTH-NAHHIACNSLDYDPDL 804
            K  +  EL  HN   D W+++ GKVYD+T W   HPGG   LL  AG+DVT+ F +YHP        L     GY        FVQ  +  +  K+  R + +   Q   + +  V+  +   +  + V V Y +    S   +L   + + +    S +   + HDS H  +   P   K     S + +TG S   W   H   HHI  N  + DPDL
Sbjct:   14 KQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKEVLLLAAGRDVTNLFESYHPMSDKPTSILKNYEIGYISSYEHPKFVQKSDFYKTLKERVRKHFKATDQ---DPQMAVSIFSRLALVYLLVFVTYYLAHYTSNNFYLNCFLAIVYALCNSLFSMHMMHDSCHAAISHYPGVWKWMG-ASFDFVTGASFLSWCHQHVIGHHIYTNVRNADPDL 229          
The following BLAST results are available for this feature:
BLAST of CX047615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FADS2_RAT2.420e-1828.57Fatty acid desaturase 2 OS=Rattus norvegicus GN=Fa... [more]
FADS2_MOUSE5.391e-1827.71Fatty acid desaturase 2 OS=Mus musculus GN=Fads2 P... [more]
FADS3_MOUSE1.569e-1726.19Fatty acid desaturase 3 OS=Mus musculus GN=Fads3 P... [more]
FADS1_MOUSE2.049e-1725.10Fatty acid desaturase 1 OS=Mus musculus GN=Fads1 P... [more]
FADS3_HUMAN2.676e-1727.14Fatty acid desaturase 3 OS=Homo sapiens GN=FADS3 P... [more]
FADS1_RAT4.564e-1725.68Fatty acid desaturase 1 OS=Rattus norvegicus GN=Fa... [more]
FADS3_RAT5.961e-1726.19Fatty acid desaturase 3 OS=Rattus norvegicus GN=Fa... [more]
FAD2L_HUMAN1.243e-1428.70Fatty acid desaturase 2-like protein OS=Homo sapie... [more]
FAD5B_DICDI3.616e-1428.64Delta(5) fatty acid desaturase B OS=Dictyostelium ... [more]
FAD5A_DICDI1.052e-1329.55Delta(5) fatty acid desaturase A OS=Dictyostelium ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15C12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15C12-F24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047615 ID=CX047615; Name=CX047615; organism=Citrus sinensis; type=EST; length=813bp
GAAAAAATAAAAATAGAGATCTCAAAAACCGAAAGCAAACCAAATCATCA
CATCCCTTGCTATTTCACTTTGAGCAAAACTTGCGGGATTTTCTTGATTT
GATTTTGCTTCCCAGGTGGCATAACCTATCTTCCCCCACAACACTTTCCA
ATTTTTCAATCTGCTGCCTTAATGGAGGCCGAGAAAAAATACATAACGGC
TGAAGAGCTTAGAACCCACAACAAGGCAGAAGATTTGTGGATCTCTATAC
AGGGGAAAGTTTACGACGTTACAGAATGGGCAAAACAACATCCTGGCGGC
GACGTTCCGCTCTTGAATTTGGCTGGCCAAGATGTAACCGATGCGTTTAT
AGCGTATCATCCAGGAACCGCTTGGCAATATCTTGATAAACTTTTTACAG
GCTATTTTGTTCAAGATTTCGAAGTATCTGAAATCTCAAAAGATTACAGG
AGACTGTACATTGAGTTTGCCAAACAGGGTATGTTTGAAAAGAAACAACA
CGTGGCATCCTGTGCCCTTACATGTGTAGCATTGATGTTTGTTGTTGTGG
TTTATGGCGTTTTGTGCTGTGAGAGCGTCTGGGCTCATTTGGGTTCAGGC
ATGTTGTTGGGGTTTCTTTGGATTCAAAGTGCTTATGTTGGTCACGATTC
CGGGCATTATCAGGTTATGACAAGTCCTAAGTTTAACAAAATTGCTCAGC
TTATTTCAGGAAATTGTTTAACAGGAATCAGCATTGCTTGGTGGAAGTGG
ACTCACAATGCCCACCACATTGCTTGCAACAGCCTTGATTACGATCCAGA
TCTTCAACACATC
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