CX047609

Overview
NameCX047609
Unique NameCX047609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PPR76_ARATH (Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.829e-12
Identity = 40/134 (29.85%), Postives = 72/134 (53.73%), Query Frame = 2
Query:  341 RQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 736
            +QI  + D+++ ++K   +   F    +I      G ++EA+  F+E+E    KP +  YNS+I+   K G  +EA +   EM+E  L+P   TY  L++ +GK +  +      + M + GC P+ +TYN+L+
Sbjct:  456 KQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILL 589          
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.695e-12
Identity = 46/175 (26.29%), Postives = 79/175 (45.14%), Query Frame = 2
Query:  344 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEXTYKSMLTKRMHLRSSTMVAILDAYMNFG 862
            Q+   F++   +   RI  N  +   +I    + G  +EA+  F EM    +      YN+++  Y+K+G+  EAL  L EM  + +     TY+ L+  YGK   YDE+      MK +   P+ +TY+ LI  ++  GL K     ++   +  +        A++DA    G
Sbjct:  389 QMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNG 563          
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PP137_ARATH (Pentatricopeptide repeat-containing protein At1g80880, mitochondrial OS=Arabidopsis thaliana GN=At1g80880 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.825e-12
Identity = 39/136 (28.68%), Postives = 72/136 (52.94%), Query Frame = 2
Query:  452 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEXTYKSMLTKRMHLRSSTMVAILDAYMNF 859
            EA R ++EM  + + P+ + Y+ +I  +SK+G   ++L   +EMK+  L+P  + Y+ L+    +   +DE    +K +  +G  PD +TYN +I+    AG L        +M+++ +     T  A L+A +NF
Sbjct:  277 EAKRIWREMGNYCITPNKDSYSHMISCFSKVGNLFDSLRLYDEMKKRGLAPGIEVYNSLVYVLTREDCFDEAMKLMKKLNEEGLKPDSVTYNSMIRPLCEAGKLDVARNVLATMISENLSPTVDTFHAFLEA-VNF 411          
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PP120_ARATH (Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.302e-12
Identity = 39/118 (33.05%), Postives = 61/118 (51.69%), Query Frame = 2
Query:  395 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 748
            ++F  + +I  LC EG    A+  F E  G  +KP++ +YN++I G S  G   EA    NEM E  L P+  T++ L+    K     + D  +K+M   G  PD  T+N+LI  ++
Sbjct:  355 DQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYS 472          
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PP100_ARATH (Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.302e-12
Identity = 46/140 (32.86%), Postives = 73/140 (52.14%), Query Frame = 2
Query:  383 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEXTYKSMLTK 802
            K+ +  FN+  II  LC+   +E AV  F EME   ++P++  YNS+I+     G++++A   L+ M E  ++P   T++ LI A+ K     E +   + M      PD ITYNLLI  F     L   +  +K M++K
Sbjct:  255 KANVVIFNT--IIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSK 392          
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.231e-12
Identity = 40/133 (30.08%), Postives = 67/133 (50.38%), Query Frame = 2
Query:  395 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEXTYKSM 793
            +EF    +I  LC +G ++EA+   ++ME      S+  YN++I G+ K  K  EA    +EM+   +S  S TY+ LI    K +  ++    +  M ++G  PD  TYN L+  F   G +K+     ++M
Sbjct:  434 DEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAM 566          
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PP163_ARATH (Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.231e-12
Identity = 38/123 (30.89%), Postives = 61/123 (49.59%), Query Frame = 2
Query:  389 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 757
            + +EF    ++     EGL+ EA   F E++    +P    YN+++  + K G + EAL  L EM+E +    S TY+ L+ AY +     E    ++MM   G  P+ ITY  +I  +  AG
Sbjct:  278 KFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAG 400          
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PP306_ARATH (Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.075e-11
Identity = 47/162 (29.01%), Postives = 77/162 (47.53%), Query Frame = 2
Query:  266 LQHDGDWTKDHFW-AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 748
            +Q DG +   + +  V+  L    R++   QVFD  +    S  N      +IG LC E  + EA +   +M+   + P+L  YN++I G+  +GK  +AL    ++K   LSP   TY+ L+  + +          +K M+  G  P  +TY +LI  FA
Sbjct:  259 MQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVS-CNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFA 419          

HSP 2 Score: 68.9366 bits (167), Expect = 4.085e-11
Identity = 43/169 (25.44%), Postives = 84/169 (49.70%), Query Frame = 2
Query:  353 QVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEXTYKSMLTKRMHLRSSTMVAILDAY 850
            Q F+M++ +++  +  N +    ++  LC++G  ++A + F EM    +  ++  YN++I G  +  K NEA   +++MK   ++P   TY+ LI  + G  K+   + +C + +K  G SP  +TYN+L+  F   G         K M  + +     T   ++D +
Sbjct:  251 QGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLC-RDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTF 418          
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PPR39_ARATH (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.834e-11
Identity = 43/145 (29.66%), Postives = 69/145 (47.59%), Query Frame = 2
Query:  416 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEXTYKSMLTKRMHLRSSTMVAILDAY 850
            II  LC++G ++ A   F EME    K  +  YN++I G+   G++++    L +M +  +SP   T+  LI ++ K     E D  LK M   G +P+ ITYN LI  F     L+        M++K       T   +++ Y
Sbjct:  269 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGY 413          
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.834e-11
Identity = 42/141 (29.79%), Postives = 67/141 (47.52%), Query Frame = 2
Query:  440 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEXTYKSMLTKRMHLRSSTMVAILDAYMNFG 862
            G +E A+  F+EM     KP++  +N+ I  Y   GKF E +   +E+    LSP   T++ L+  +G+  M  E+    K MK  G  P+  T+N LI  ++  G  ++    Y+ ML   +    ST   +L A    G
Sbjct:  398 GKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGG 538          

HSP 2 Score: 68.9366 bits (167), Expect = 4.085e-11
Identity = 48/194 (24.74%), Postives = 85/194 (43.81%), Query Frame = 2
Query:  305 AVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK-------YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEXTYKSMLTKRMHLRSSTMVAILDAYMNFG 862
            A++     S R ++  +V  +M  N     I  +NS  +I     +G+++EA+    +M     KP +  Y +++ G+ + GK   A+    EM+     P   T++  I+ YG         K++DEI++C       G SPD +T+N L+  F   G+   +   +K M          T   ++ AY   G
Sbjct:  319 ALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNS--LISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVC-------GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCG 503          
The following BLAST results are available for this feature:
BLAST of CX047609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PPR76_ARATH2.829e-1229.85Pentatricopeptide repeat-containing protein At1g51... [more]
PP178_ARATH3.695e-1226.29Pentatricopeptide repeat-containing protein At2g31... [more]
PP137_ARATH4.825e-1228.68Pentatricopeptide repeat-containing protein At1g80... [more]
PP120_ARATH6.302e-1233.05Putative pentatricopeptide repeat-containing prote... [more]
PP100_ARATH6.302e-1232.86Pentatricopeptide repeat-containing protein At1g63... [more]
PP281_ARATH8.231e-1230.08Pentatricopeptide repeat-containing protein At3g53... [more]
PP163_ARATH8.231e-1230.89Pentatricopeptide repeat-containing protein At2g18... [more]
PP306_ARATH1.075e-1129.01Pentatricopeptide repeat-containing protein At4g11... [more]
PPR39_ARATH1.834e-1129.66Pentatricopeptide repeat-containing protein At1g12... [more]
PP362_ARATH1.834e-1129.79Pentatricopeptide repeat-containing protein At5g02... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15C06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15C06-F12-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047609 ID=CX047609; Name=CX047609; organism=Citrus sinensis; type=EST; length=863bp
CCTGCATCTGCATAATAATAATAATACCCATTACAAAGTCAGACTCAACA
AAAATAAGAAGAATAAGCTGACACATAACCGCGTCTTCTTCTCCAAAATC
CTAATCAGAAAACCCATCAGCTGTTGTTGTTTGTCATCGGCTCCGTCACT
TGATTATCATTCGACAAAACACACGACCCTTCTTGTTGAGAGCTACCATG
AGCACCAAGCACTCAACGCATTAATTCAGAGGCTCAACAAGAAAGTTTCA
TGCCCTCTTCAAATTCTTCAACACGATGGAGATTGGACCAAAGATCACTT
TTGGGCTGTCATCAGATTTCTCAAAAATTCCTCGAGGTCCAGGCAAATTC
CCCAGGTGTTTGATATGTGGAAGAACATTGAAAAATCACGAATTAATGAA
TTCAACTCTCAAAAGATTATTGGGATGTTATGTGAAGAGGGTTTGATGGA
AGAAGCTGTGCGTGCTTTTCAAGAAATGGAGGGATTTGCTCTTAAACCTT
CATTGGAGATTTACAATTCGATAATACATGGTTATTCAAAAATTGGGAAG
TTCAATGAAGCTTTGTTATTCCTTAATGAGATGAAGGAAATGAATTTGTC
TCCACAATCAGATACTTATGACGGTCTAATTCAAGCTTATGGTAAGTATA
AAATGTATGATGAGATTGATATGTGTTTGAAGATGATGAAACTAGATGGG
TGTTCTCCTGATCACATTACTTATAATTTGCTTATTCAAGAGTTTGCATG
TGCTGGCTTGCTCAAAAGAATGGAANGGACATATAAAAGCATGCTTACAA
AACGAATGCATTTGCGGTCATCTACTATGGTTGCAATACTTGATGCTTAC
ATGAATTTTGGGA
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