CX047609
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PPR76_ARATH (Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.829e-12 Identity = 40/134 (29.85%), Postives = 72/134 (53.73%), Query Frame = 2 Query: 341 RQIPQVFDMWKNIEKSRINE--FNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLI 736 +QI + D+++ ++K + F +I G ++EA+ F+E+E KP + YNS+I+ K G +EA + EM+E L+P TY L++ +GK + + + M + GC P+ +TYN+L+ Sbjct: 456 KQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILL 589
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.695e-12 Identity = 46/175 (26.29%), Postives = 79/175 (45.14%), Query Frame = 2 Query: 344 QIPQVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEXTYKSMLTKRMHLRSSTMVAILDAYMNFG 862 Q+ F++ + RI N + +I + G +EA+ F EM + YN+++ Y+K+G+ EAL L EM + + TY+ L+ YGK YDE+ MK + P+ +TY+ LI ++ GL K ++ + + A++DA G Sbjct: 389 QMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNG 563
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PP137_ARATH (Pentatricopeptide repeat-containing protein At1g80880, mitochondrial OS=Arabidopsis thaliana GN=At1g80880 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.825e-12 Identity = 39/136 (28.68%), Postives = 72/136 (52.94%), Query Frame = 2 Query: 452 EAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEXTYKSMLTKRMHLRSSTMVAILDAYMNF 859 EA R ++EM + + P+ + Y+ +I +SK+G ++L +EMK+ L+P + Y+ L+ + +DE +K + +G PD +TYN +I+ AG L +M+++ + T A L+A +NF Sbjct: 277 EAKRIWREMGNYCITPNKDSYSHMISCFSKVGNLFDSLRLYDEMKKRGLAPGIEVYNSLVYVLTREDCFDEAMKLMKKLNEEGLKPDSVTYNSMIRPLCEAGKLDVARNVLATMISENLSPTVDTFHAFLEA-VNF 411
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PP120_ARATH (Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.302e-12 Identity = 39/118 (33.05%), Postives = 61/118 (51.69%), Query Frame = 2 Query: 395 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 748 ++F + +I LC EG A+ F E G +KP++ +YN++I G S G EA NEM E L P+ T++ L+ K + D +K+M G PD T+N+LI ++ Sbjct: 355 DQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYS 472
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PP100_ARATH (Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.302e-12 Identity = 46/140 (32.86%), Postives = 73/140 (52.14%), Query Frame = 2 Query: 383 KSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEXTYKSMLTK 802 K+ + FN+ II LC+ +E AV F EME ++P++ YNS+I+ G++++A L+ M E ++P T++ LI A+ K E + + M PD ITYNLLI F L + +K M++K Sbjct: 255 KANVVIFNT--IIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSK 392
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.231e-12 Identity = 40/133 (30.08%), Postives = 67/133 (50.38%), Query Frame = 2 Query: 395 NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEXTYKSM 793 +EF +I LC +G ++EA+ ++ME S+ YN++I G+ K K EA +EM+ +S S TY+ LI K + ++ + M ++G PD TYN L+ F G +K+ ++M Sbjct: 434 DEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAM 566
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PP163_ARATH (Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.231e-12 Identity = 38/123 (30.89%), Postives = 61/123 (49.59%), Query Frame = 2 Query: 389 RINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAG 757 + +EF ++ EGL+ EA F E++ +P YN+++ + K G + EAL L EM+E + S TY+ L+ AY + E ++MM G P+ ITY +I + AG Sbjct: 278 KFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAG 400
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PP306_ARATH (Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.075e-11 Identity = 47/162 (29.01%), Postives = 77/162 (47.53%), Query Frame = 2 Query: 266 LQHDGDWTKDHFW-AVIRFLKNSSRSRQIPQVFDMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFA 748 +Q DG + + + V+ L R++ QVFD + S N +IG LC E + EA + +M+ + P+L YN++I G+ +GK +AL ++K LSP TY+ L+ + + +K M+ G P +TY +LI FA Sbjct: 259 MQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVS-CNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFA 419 HSP 2 Score: 68.9366 bits (167), Expect = 4.085e-11 Identity = 43/169 (25.44%), Postives = 84/169 (49.70%), Query Frame = 2 Query: 353 QVFDMWKNIEKSRI--NEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAY-GKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEXTYKSMLTKRMHLRSSTMVAILDAY 850 Q F+M++ +++ + N + ++ LC++G ++A + F EM + ++ YN++I G + K NEA +++MK ++P TY+ LI + G K+ + +C + +K G SP +TYN+L+ F G K M + + T ++D + Sbjct: 251 QGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLC-RDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTF 418
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PPR39_ARATH (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.834e-11 Identity = 43/145 (29.66%), Postives = 69/145 (47.59%), Query Frame = 2 Query: 416 IIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEXTYKSMLTKRMHLRSSTMVAILDAY 850 II LC++G ++ A F EME K + YN++I G+ G++++ L +M + +SP T+ LI ++ K E D LK M G +P+ ITYN LI F L+ M++K T +++ Y Sbjct: 269 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGY 413
BLAST of CX047609 vs. ExPASy Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.834e-11 Identity = 42/141 (29.79%), Postives = 67/141 (47.52%), Query Frame = 2 Query: 440 GLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGKYKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEXTYKSMLTKRMHLRSSTMVAILDAYMNFG 862 G +E A+ F+EM KP++ +N+ I Y GKF E + +E+ LSP T++ L+ +G+ M E+ K MK G P+ T+N LI ++ G ++ Y+ ML + ST +L A G Sbjct: 398 GKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGG 538 HSP 2 Score: 68.9366 bits (167), Expect = 4.085e-11 Identity = 48/194 (24.74%), Postives = 85/194 (43.81%), Query Frame = 2 Query: 305 AVIRFLKNSSRSRQIPQVF-DMWKNIEKSRINEFNSQKIIGMLCEEGLMEEAVRAFQEMEGFALKPSLEIYNSIIHGYSKIGKFNEALLFLNEMKEMNLSPQSDTYDGLIQAYGK-------YKMYDEIDMCLKMMKLDGCSPDHITYNLLIQEFACAGLLKRMEXTYKSMLTKRMHLRSSTMVAILDAYMNFG 862 A++ S R ++ +V +M N I +NS +I +G+++EA+ +M KP + Y +++ G+ + GK A+ EM+ P T++ I+ YG K++DEI++C G SPD +T+N L+ F G+ + +K M T ++ AY G Sbjct: 319 ALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNS--LISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVC-------GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCG 503 The following BLAST results are available for this feature:
BLAST of CX047609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 40
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Sequences
The
following sequences are available for this feature:
EST sequence >CX047609 ID=CX047609; Name=CX047609; organism=Citrus sinensis; type=EST; length=863bpback to top |