CX047599

Overview
NameCX047599
Unique NameCX047599
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047599 vs. ExPASy Swiss-Prot
Match: FAL1_PHANO (ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria nodorum GN=FAL1 PE=3 SV=3)

HSP 1 Score: 266.929 bits (681), Expect = 9.981e-71
Identity = 129/179 (72.07%), Postives = 153/179 (85.47%), Query Frame = -1
Query:  314 MNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 850
            M  PVRILVKRDELTLEG+KQ+ + +EKEEWK +TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HGDM Q  RD IM++FR  +SRVLI+TD+ ARGIDVQQVSLVINYDLP+  ENY+HRIGRSGRFGRKGVAINFVT++D R+L DI+ +Y+  I+E+P NVADLL
Sbjct:  195 MTDPVRILVKRDELTLEGLKQYFIAIEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQRERDSIMQDFRQANSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTQEDVRILRDIELYYSTQIDEMPMNVADLL 373          
BLAST of CX047599 vs. ExPASy Swiss-Prot
Match: FAL1_NEUCR (ATP-dependent RNA helicase fal-1 OS=Neurospora crassa GN=fal-1 PE=3 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 9.981e-71
Identity = 129/179 (72.07%), Postives = 153/179 (85.47%), Query Frame = -1
Query:  314 MNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 850
            M  PVRILVKRDELTLEG+KQ+ + VEKE+WK +TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HGDM Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLP+  ENY+HRIGRSGRFGRKGVAINFVT +D R+L DI+ +Y+  I+E+P NVADL+
Sbjct:  221 MTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIELYYSTQIDEMPMNVADLI 399          
BLAST of CX047599 vs. ExPASy Swiss-Prot
Match: FAL1_GIBZE (ATP-dependent RNA helicase FAL1 OS=Gibberella zeae GN=FAL1 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 9.981e-71
Identity = 129/179 (72.07%), Postives = 153/179 (85.47%), Query Frame = -1
Query:  314 MNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 850
            M  PVRILVKRDELTLEG+KQ+ + VEKE+WK +TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HGDM Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLP+  ENY+HRIGRSGRFGRKGVAINFVT +D R+L DI+ +Y+  I+E+P NVADL+
Sbjct:  222 MTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRILRDIELYYSTQIDEMPMNVADLI 400          
BLAST of CX047599 vs. ExPASy Swiss-Prot
Match: FAL1_MAGGR (ATP-dependent RNA helicase FAL1 OS=Magnaporthe grisea GN=FAL1 PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.304e-70
Identity = 128/179 (71.51%), Postives = 153/179 (85.47%), Query Frame = -1
Query:  314 MNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 850
            M  PVRILVKRDELTLEG+KQ+ + +EKE+WK +TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HGDM Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLP+  ENY+HRIGRSGRFGRKGVAINFVT +D R+L DI+ +Y+  I+E+P NVADL+
Sbjct:  222 MTDPVRILVKRDELTLEGLKQYFIAIEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIELYYSTQIDEMPMNVADLI 400          
BLAST of CX047599 vs. ExPASy Swiss-Prot
Match: FAL1_BOTFB (ATP-dependent RNA helicase fal1 OS=Botryotinia fuckeliana (strain B05.10) GN=fal1 PE=3 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.224e-70
Identity = 129/179 (72.07%), Postives = 152/179 (84.92%), Query Frame = -1
Query:  314 MNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 850
            M  PVRILVKRDELTLEG+KQ+ + VEKE+WK +TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HG+M Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINFVT +D R+L DI+ +Y+  I+E+P NVADLL
Sbjct:  220 MTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPVNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIELYYSTQIDEMPMNVADLL 398          
BLAST of CX047599 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 1.441e-69
Identity = 130/179 (72.63%), Postives = 152/179 (84.92%), Query Frame = -1
Query:  314 MNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 850
            M +PV+ILVKRDELTLEGIKQF V VEKEEWK +TLCDLY+TL ITQ+VIF NT+RKVD+L++KMRS + TVS+ HGDM Q  RD IM EFRSG SRVLITTD+ ARGIDVQQVSLVINYDLP   E Y+HRIGRSGRFGRKGVAINFV  DD ++L DI+++Y+  I+E+P NVADL+
Sbjct:  230 MTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 408          
BLAST of CX047599 vs. ExPASy Swiss-Prot
Match: IF4A_CAEEL (Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.882e-69
Identity = 126/179 (70.39%), Postives = 149/179 (83.24%), Query Frame = -1
Query:  314 MNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 850
            M  P+RILVK+DELTLEGI+QF++NV+K+EWK + LCDLY  + +TQ+VIF NTRRKVD LT+KM     TVS  HGDMDQ  RD IMREFRSGSSRVLITTD+LARGIDVQQVSLVINYDLP+  ENY+HRIGRSGRFGRKGVAINFVT +D R L +I+ +Y   IEE+P ++ADL+
Sbjct:  224 MRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIESYYTTQIEEMPESIADLI 402          
BLAST of CX047599 vs. ExPASy Swiss-Prot
Match: IF4A3_NICPL (Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.882e-69
Identity = 129/179 (72.07%), Postives = 149/179 (83.24%), Query Frame = -1
Query:  314 MNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 850
            M  PVRILVKRDELTLEGIKQF V VEKEEWK +TLCDLY+TL ITQ+VIF NT+RKVDWLT KMR  + TVS+ HGDM Q  RD IM EFR G++RVLITTD+ ARG+DVQQVSLVINYDLP   E Y+HRIGRSGRFGRKGVAINFV  DD ++L DI+++Y+  I+E+P NVADL+
Sbjct:  213 MTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMRENNFTVSSMHGDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 391          
BLAST of CX047599 vs. ExPASy Swiss-Prot
Match: FAL1_SCHPO (ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces pombe GN=tif412 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 5.477e-69
Identity = 123/176 (69.89%), Postives = 151/176 (85.80%), Query Frame = -1
Query:  314 PVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 841
            PVRILVKRDELTLEG+KQ+ + VEKEEWK +TLCDLY+TL ITQ+VIF N+RRKVDWLT+KMR  + TV++ HG+M Q  RD IM++FR G+SRVLI TD+ ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINFVT +D R+L DI+++Y+ VI+E+P N+ D++
Sbjct:  219 PVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQYYSTVIDEMPMNIGDMV 394          
BLAST of CX047599 vs. ExPASy Swiss-Prot
Match: IF4A3_DANRE (Eukaryotic initiation factor 4A-III OS=Danio rerio GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.220e-68
Identity = 125/179 (69.83%), Postives = 151/179 (84.36%), Query Frame = -1
Query:  314 MNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 850
            M  P+RILVKRDELTLEGIKQF V VE+EEWK +TLCDLY+TL ITQ+VIF NT+RKVDWLT+KMR  + TVS+ HGDM Q  R+ IM+EFRSG+SRVLI+TD+ ARG+DV QVSL+INYDLP   E Y+HRIGRSGR+GRKGVAINFV  DD R+L DI+++Y+  I+E+P NVADL+
Sbjct:  228 MTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 406          
The following BLAST results are available for this feature:
BLAST of CX047599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_PHANO9.981e-7172.07ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria n... [more]
FAL1_NEUCR9.981e-7172.07ATP-dependent RNA helicase fal-1 OS=Neurospora cra... [more]
FAL1_GIBZE9.981e-7172.07ATP-dependent RNA helicase FAL1 OS=Gibberella zeae... [more]
FAL1_MAGGR1.304e-7071.51ATP-dependent RNA helicase FAL1 OS=Magnaporthe gri... [more]
FAL1_BOTFB2.224e-7072.07ATP-dependent RNA helicase fal1 OS=Botryotinia fuc... [more]
RH2_ARATH1.441e-6972.63DEAD-box ATP-dependent RNA helicase 2 OS=Arabidops... [more]
IF4A_CAEEL1.882e-6970.39Eukaryotic initiation factor 4A OS=Caenorhabditis ... [more]
IF4A3_NICPL1.882e-6972.07Eukaryotic initiation factor 4A-3 OS=Nicotiana plu... [more]
FAL1_SCHPO5.477e-6969.89ATP-dependent RNA helicase fal1 OS=Schizosaccharom... [more]
IF4A3_DANRE1.220e-6869.83Eukaryotic initiation factor 4A-III OS=Danio rerio... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15B10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15B10-D20-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047599 ID=CX047599; Name=CX047599; organism=Citrus sinensis; type=EST; length=850bp
TTTTTTGCAGCCTTGTTTATATTAGATGAAAGAACAAGCCAAATAACTTT
AAAAAGCAATAAGCAAGCAAGTCGAGTTTTCCTAAGACAAATAAACTAGC
CATGCTCCAACTCTACATAATGTCGCACAACAATTAAAAAAAAAGTGTAG
AACAACATAATTTAATGCAAACCTACAACAGATGCAACATAAACTTAAAC
AAAGGCCATTCCAAATGCCATAATTGTAGGGTTCTTTTAGCAACCACTCC
AGACCCACCATAATGACTAGACTTCAAACTTCAAAAACACCTTACCAATC
CAAAAACACATCACAGGAGATCAGCAACATTTGCTGGCAGCTCTTCAATT
ACGACATTGTAAAACTTTTGAATATCAAACAGCATCCTTTCATCATCCCT
GGTCACGAAATTAATGGCAACACCCTTTCTTCCAAATCGTCCACTACGAC
CTATACGATGCAGGTAGTTTTCTGGCTGTGTAGGAAGATCATAATTTATG
ACCAGGGACACTTGCTGGACATCAATACCACGTGCCAAGAGATCAGTAGT
GATAAGCACACGAGACGAACCAGACCGGAATTCACGCATGATGATGTCCC
TAGTGTTTTGGTCCATGTCACCGTGGGTGGCAGACACGGTATGATCACGA
CTACGCATCTTATCTGTCAGCCAATCTACCTTACGCCGGGTGTTCACAAA
GATGACACTTTGGGTGATTGCCAAAGTCTCGTACAGATCGCATAGTGTCT
CAAGCTTCCATTCCTCCTTTTCAACATTAACATGAAATTGCTTGATACCT
TCTAGGGTAAGCTCATCACGTTTCACCAGAATCCTAACGGGTTTATTCAT
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