CX047579

Overview
NameCX047579
Unique NameCX047579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047579 vs. ExPASy Swiss-Prot
Match: CAF1H_ARATH (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.384e-20
Identity = 68/205 (33.17%), Postives = 99/205 (48.29%), Query Frame = 1
Query:  178 LISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYG--GLDRVA 786
            LI   +  Y FI++DTEFP  +         R   +     + Y  +  +VD   LIQ+GLTL D +G +     GG     WE NF DF +  DA    SIE LR  G+D  + R+EG+    F   M         +++WVTFH +YD  YL+K  T  +LP   + F   +    G ++YD+K +   C+ L    GL+ +A
Sbjct:    3 LIEDCLRSYRFIAIDTEFPSTL---------RETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRI-----GGT----WEINFSDFGV-DDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLG-SVYDLKVMAGRCEGLSSRLGLETLA 187          
BLAST of CX047579 vs. ExPASy Swiss-Prot
Match: CAF1C_ARATH (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana GN=CAF1-3 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.944e-19
Identity = 69/218 (31.65%), Postives = 96/218 (44.04%), Query Frame = 1
Query:  142 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILT-RRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYG--GLDRVA 786
            EVW  N E E   I   +     I++DTEFPG +    +D S             Y+ +K NVD  +LIQ+G TL D  G              WE N  DFD         SI  L+  G++ ++ R+EG+    F           +  ++WV F  +YD  YLVK LT  + LP   +EF   ++   G  ++DVK I   C  L    GL R+A
Sbjct:    8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDAS---------EEIRYRDMKFNVDNTHLIQLGFTLFDRRGFAK----------TWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIA 206          
BLAST of CX047579 vs. ExPASy Swiss-Prot
Match: CAF1D_ARATH (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana GN=CAF1-4 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.943e-18
Identity = 67/218 (30.73%), Postives = 96/218 (44.04%), Query Frame = 1
Query:  142 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILT-RRSLPSGLDEFLTILRVFFGNNIYDVKHIMRFCQSLYG--GLDRVA 786
            EVW  N E E + I   +  +  I++DTEFPG +    +D S             Y+ +K NVD  +LIQ+G TL D  G              WE N  DF+         SI  L+  G++ ++  +EG+    F           +  ++WV F  +YD  YLVK LT  + LP   +EF   +    G  ++DVK I   C  L    GL R+A
Sbjct:    3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDAS---------EEIRYRDMKFNVDNTHLIQLGFTLFDRRGITK----------TWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFFRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDVKKIAESCSGLSSRFGLQRIA 201          
The following BLAST results are available for this feature:
BLAST of CX047579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1H_ARATH9.384e-2033.17Putative CCR4-associated factor 1 homolog 8 OS=Ara... [more]
CAF1C_ARATH7.944e-1931.65Putative CCR4-associated factor 1 homolog 3 OS=Ara... [more]
CAF1D_ARATH3.943e-1830.73Putative CCR4-associated factor 1 homolog 4 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_15A05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15A05-B10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047579 ID=CX047579; Name=CX047579; organism=Citrus sinensis; type=EST; length=792bp
AGGACTTTCAAATCTCACCCACGAAGCGTCGAGCTGCAAGCTATTAGCTG
ACCATCATCACTCATCATGGGAGTTGAAGATTTTTCTACGGATTTAGATT
CAAATTCAAATTCCAGCTCATCGAATTCGATTATAATACGCGAAGTCTGG
GCGTCTAATTTGGAATCCGAATTCGAACTCATCAGCCAAGTCATCGATCG
GTACCCTTTTATTTCCATGGACACCGAATTCCCCGGTCTTGTCTACCGAC
CCGATGTGGACCCCTCCACCAGGCCTTACTTCCGTCAACGCAAGCCGTCC
GATCACTACAAGGTTCTGAAATCCAACGTCGACGCCTTGAACTTGATCCA
GGTGGGCCTCACTCTCTCTGACTCTTCCGGTAACTTGCCGGATTTGGGCT
CCGGGGGCAACAATAAATTCATCTGGGAGTTCAACTTCCGGGACTTCGAT
ATCGCGACGGACGCCCACGCGCCGGATTCGATAGAGCTGCTGAGACTGCA
GGGGATTGACTTTGAGCGCAACAGGAAGGAAGGCGTTGACTCGGTTCGGT
TCGCCGAGTTGATGATGTCGTCGGGACTCGTCTGTAACGAATCGGTGAGT
TGGGTCACGTTCCACAGCGCGTACGATTTCGGGTACCTGGTTAAGATCCT
CACGCGCCGGAGCTTGCCCAGTGGCCTAGACGAGTTCTTGACGATCCTCA
GGGTGTTTTTCGGTAACAATATTTATGACGTCAAACACATTATGCGGTTC
TGTCAGAGCTTGTACGGTGGTTTGGACCGAGTGGCTCGGACG
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