CX047566

Overview
NameCX047566
Unique NameCX047566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 4.283e-78
Identity = 149/247 (60.32%), Postives = 185/247 (74.90%), Query Frame = 1
Query:  139 RLDVAEFAGLRANAGATYATGARDASFF-------DAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            R   A+F+G++    ++    A+  S F       DA   +++  VAA   P  K     ++VAINGFGRIGRNF+RCW GR DS ++VV +ND+ GVK ASHLLKYDS+LGTF ADV     +TISV+GK IK+VSNR+PLQLPW E+ IDIV+E TGVFVD PGAGKHI+AGAKKV+ITAP KG  I T+VVGVNEKDY H+  +IVSNASCTTNC+APF+KV+D+E G+V+G +TTTHSYTGDQ
Sbjct:   24 RSTFAQFSGMKKVNQSSRLQPAQSGSAFGGYSDANDAFYTRVSGIVAATFGPTMK-----VRVAINGFGRIGRNFIRCWAGRSDSNMEVVCINDTSGVKTASHLLKYDSILGTFDADVS-AGEDTISVNGKTIKIVSNRNPLQLPWKEMNIDIVVEATGVFVDAPGAGKHIEAGAKKVLITAPGKGDGIGTFVVGVNEKDYSHDKYDIVSNASCTTNCMAPFMKVLDDEFGVVRGMMTTTHSYTGDQ 264          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 8.930e-76
Identity = 150/264 (56.82%), Postives = 190/264 (71.97%), Query Frame = 1
Query:  103 TTHSFPTQCSTKRLDVAEFAGLR----------ANAGATYATGARDAS--FFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +T S    CS  R   A+F+GL+          A  G+ +  G  DA+  FF+AV     P   + +  +K      ++VAINGFGRIGRNF+RCW GR DS +DVV +ND+ GVK ASHLLKYDS+LGTF +DV +   ++I+VDGK IKVVSNR+PL+LPW E+ IDIV+E TGVFVD  GAGKHIQAGAKKV+ITAP KG  + T+VVGVN+  Y H+  +IVSNASCTTNC+APF+KV+D+E G+V+G +TTTHSYTGDQ
Sbjct:   12 STSSKSAVCSG-RSSFAQFSGLKKVNNTARLQTAEQGSAFG-GVSDANDAFFNAVNTMGAPARTSNAPSMK------VRVAINGFGRIGRNFIRCWAGRTDSNMDVVCINDTSGVKTASHLLKYDSILGTFDSDV-VAGEDSITVDGKTIKVVSNRNPLELPWKEMEIDIVVEATGVFVDAVGAGKHIQAGAKKVLITAPGKGEGVGTFVVGVNDHLYSHDKFDIVSNASCTTNCMAPFMKVLDDEFGVVRGMMTTTHSYTGDQ 266          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 1.092e-73
Identity = 135/182 (74.18%), Postives = 156/182 (85.71%), Query Frame = 1
Query:  313 NGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            NGFGRIGRNFLRC   R++S L+V+ +NDSGGVK ASHLLKYDS LG F ADVKIVD+  ISV+GK I+VVS+RDP +LPW E+ ID+VIEGTGVF+D PGA KHI+AGAKKV+ITAPAKG+DIPTYVVGVN  DY H  A I+SNASCTTNCLAPFVKV+DE+ GIV+G +T THSYTGDQ
Sbjct:    1 NGFGRIGRNFLRCLETRQNSLLEVIAINDSGGVKQASHLLKYDSTLGKFDADVKIVDDGHISVNGKSIRVVSSRDPTKLPWGEMEIDLVIEGTGVFIDTPGASKHIEAGAKKVLITAPAKGSDIPTYVVGVNAHDYKHSDA-IISNASCTTNCLAPFVKVLDEKFGIVKGTMTNTHSYTGDQ 181          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 247.284 bits (630), Expect = 9.262e-65
Identity = 118/186 (63.44%), Postives = 146/186 (78.49%), Query Frame = 1
Query:  301 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +VAINGFGRIGRNFLRCW GR DS L+VV +ND+   +  +HLL+YDS+LG   AD+   D  +I+V+GK IK VS+R+PL LPWAE  +D+VIE TGVFV   GA KH+QAGAKKV+ITAP KG +I TYVVGVN  +Y HE   ++SNASCTTNCLAPF KV+++  GI++G +TTTHSYTGDQ
Sbjct:    3 RVAINGFGRIGRNFLRCWLGRTDSQLEVVGINDTSDPRTNAHLLRYDSMLGKLDADIS-ADENSITVNGKTIKCVSDRNPLNLPWAEWNVDLVIEATGVFVTHEGATKHVQAGAKKVLITAPGKGPNIGTYVVGVNAHEYKHEEYEVISNASCTTNCLAPFGKVINDNFGIIKGTMTTTHSYTGDQ 187          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.361e-60
Identity = 111/187 (59.36%), Postives = 144/187 (77.01%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            ++VAINGFGRIGRNF RCW GR+++ +++V VND+   +  +HLLKYDS+LG  K      D+ +I+V+GK IK VS+R+P  LPW E  ID++IE TGVFV   GA KHI AGAKKV+ITAP K  D  T+V+GVN  DYDH + NI+SNASCTTNCLAP  KV++++ GI++G++TTTHSYTGDQ
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENTNIELVAVNDTSDPRTNAHLLKYDSMLGKLKNVDITADDNSITVNGKTIKCVSDRNPENLPWKEWEIDLIIEATGVFVSKEGATKHINAGAKKVLITAPGKNED-GTFVMGVNHHDYDHNLHNIISNASCTTNCLAPIAKVLNDKFGIIKGSMTTTHSYTGDQ 187          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 6.869e-60
Identity = 110/187 (58.82%), Postives = 143/187 (76.47%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            ++VAINGFGRIGRNF RCW GR++S +++V VND+   +  +HLLKYDS+LG  K      D+ +I+V+GK IK VS+R+P  LPW E  ID++IE TGVF    GA KH+ AGAKKV+ITAP K  D  T+V+GVN  DYDH V +I+SNASCTTNCLAP  KV++++ GI++G++TTTHSYTGDQ
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENSNIELVAVNDTSDPRTNAHLLKYDSMLGKLKNVDITADDNSITVNGKTIKCVSDRNPENLPWKEWEIDLIIESTGVFTSKEGALKHVNAGAKKVLITAPGKNED-GTFVIGVNHHDYDHNVHHIISNASCTTNCLAPIAKVLNDKFGIIKGSMTTTHSYTGDQ 187          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.639e-53
Identity = 106/187 (56.68%), Postives = 138/187 (73.80%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +KV INGFGRIGR+F R   GR++  +++V +ND    K+ +HLLKYDS+ G FK  V+  D ++I VDGK IKV + +DP Q+PW +LG+D+VIE TGVF D   A KH+Q GAKKVIITAPAK  DI T V+GVNE+ Y+ +  NI+SNASCTTNCLAP VKV++E  G+ +G + T H+YT DQ
Sbjct:    3 IKVGINGFGRIGRSFFRASWGREE--IEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEAKD-DSIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAKNPDI-TVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTVHAYTNDQ 185          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_STRCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces coelicolor GN=gap PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 5.272e-52
Identity = 102/187 (54.55%), Postives = 134/187 (71.66%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            ++V INGFGRIGRN+ R     + + +++V VND G     +HLLKYD++LG  KA+V   + +TI+VDGK IKV+S R+P  +PW ELG+DIVIE TG+F     A KHI  GAKKV+I+APAK  DI T V+GVN+  YD    +++SNASCTTNC+AP  KV+DE  GIV+G +TT H+YT DQ
Sbjct:    3 IRVGINGFGRIGRNYFRALL-EQGADIEIVAVNDLGDTATTAHLLKYDTILGRLKAEVSHTE-DTITVDGKTIKVLSERNPADIPWGELGVDIVIESTGIFTKKADAEKHIAGGAKKVLISAPAKDEDI-TIVMGVNQDKYDPANHHVISNASCTTNCVAPMAKVLDENFGIVKGLMTTVHAYTNDQ 186          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 193.741 bits (491), Expect = 1.215e-48
Identity = 101/187 (54.01%), Postives = 128/187 (68.45%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +KV INGFGRIGRN  R     K+  ++VV VND       +HLLKYDS+ G   A+V +  N  + V+GK I V + RDP  L W E+G+DIV+E TG F     A KH++AGAKKVII+APAK  DI T V+GVN+  YD +  +++SNASCTTNCLAPF KV+ E+ GIV+G +TT HSYT DQ
Sbjct:    3 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLV-VNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDI-TIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQ 185          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P1_BACCE (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus cereus GN=gap1 PE=1 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 1.029e-47
Identity = 97/186 (52.15%), Postives = 128/186 (68.82%), Query Frame = 1
Query:  301 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            K+ INGFGRIGRN  R      +S ++VV +ND    K  +HLLKYD++ GT  A+V   +N +I V+GK IKV++ RDP QLPW++ G+++V+E TG F     A KH+    KKVII+APA   DI T V+GVN + YD    N+VSNASCTTNCLAPF KV++E+ G+ +G +TT HSYT DQ
Sbjct:    3 KIGINGFGRIGRNVFRA--ALNNSEVEVVAINDLTDAKTLAHLLKYDTVHGTLNAEVSANEN-SIVVNGKEIKVIAERDPAQLPWSDYGVEVVVESTGRFTKKSDAEKHLGGSVKKVIISAPASDEDI-TVVMGVNHEQYDAANHNVVSNASCTTNCLAPFAKVLNEKFGVKRGMMTTIHSYTNDQ 184          
The following BLAST results are available for this feature:
BLAST of CX047566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3PA_CHOCR4.283e-7860.32Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_GRAVE8.930e-7656.82Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_SCEVA1.092e-7374.18Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P2_SYNY39.262e-6563.44Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3P2_ANASP2.361e-6059.36Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANAVT6.869e-6058.82Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P_AQUAE1.639e-5356.68Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]
G3P_STRCO5.272e-5254.55Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_BACST1.215e-4854.01Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P1_BACCE1.029e-4752.15Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14H07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14H07-P13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047566 ID=CX047566; Name=CX047566; organism=Citrus sinensis; type=EST; length=917bp
TTTAGAAGTTGCAGCAAATCAGCAACTAAGCCACAGGCCATGGCCAGTCA
CTCAGCTCTTGCTCCCTCAAGAATCCCGGCCATCACTAGGATTCCATCCA
AGACTACTCACTCTTTTCCCACTCAATGCTCCACCAAGAGGCTGGATGTG
GCTGAATTCGCTGGCCTTCGAGCAAATGCAGGCGCGACATACGCCACTGG
TGCTAGAGATGCATCCTTCTTTGATGCTGTGACTGCTCAACTTACTCCTA
AGGTTGCAGCAGGATCAGTTCCTGTAAAGAAAGAAACCGTGGCCAAATTG
AAGGTGGCAATTAATGGATTTGGACGTATTGGCAGGAACTTCCTCCGATG
CTGGCACGGCAGGAAAGACTCACCCCTTGATGTTGTTGTTGTCAATGACA
GTGGTGGTGTCAAGAATGCTTCACACCTTCTAAAATATGACTCATTGCTT
GGAACTTTTAAAGCAGACGTGAAAATAGTGGACAACGAGACCATCTCTGT
CGATGGTAAGCTCATCAAGGTTGTCTCTAACAGGGACCCTCTCCAGCTCC
CTTGGGCTGAGCTCGGAATTGACATCGTTATTGAGGGAACAGGAGTTTTT
GTGGACGGCCCTGGTGCTGGAAAGCACATCCAAGCTGGTGCCAAGAAAGT
TATTATCACTGCTCCAGCAAAAGGTGCAGACATTCCAACCTATGTCGTTG
GAGTTAACGAGAAGGATTACGATCACGAGGTTGCAAACATTGTGAGCAAT
GCTTCTTGCACCACAAACTGTTTGGCTCCTTTTGTGAAGGTCATGGATGA
AGAATTGGGGATTGTNCAGGGAGCGATTACAACTACTCACTCCTACACTG
GAGACCAGAGGCTCTTGGATGCTTCACACAGGGACTTGAGGAGAGCGAGA
GCTGCAGCGTTGAACAT
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