CX047566

Overview
NameCX047566
Unique NameCX047566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_CORGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Corynebacterium glutamicum GN=gap PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 6.669e-47
Identity = 100/187 (53.48%), Postives = 126/187 (67.38%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            ++V INGFGRIGRNF R    R D  L+VV VND    K  S LLK+DS++G    +V+  D+++I+V GK I V + RDP  L WA   +DIVIE TG F D   A  HI+AGAKKVII+APA   D  T+V GVN + YD E  N++S ASCTTNCLAP  KV++++ GI  G +TT H+YTGDQ
Sbjct:    3 IRVGINGFGRIGRNFFRAVLERSDD-LEVVAVNDLTDNKTLSTLLKFDSIMGRLGQEVEY-DDDSITVGGKRIAVYAERDPKNLDWAAHNVDIVIESTGFFTDANAAKAHIEAGAKKVIISAPASNEDA-TFVYGVNHESYDPENHNVISGASCTTNCLAPMAKVLNDKFGIENGLMTTVHAYTGDQ 186          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_BACME (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus megaterium GN=gap PE=3 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 6.669e-47
Identity = 95/187 (50.80%), Postives = 127/187 (67.91%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +K+ INGFGRIGRN  R     K+  ++VV +ND       +HLLKYDS+ G   A+V +VD   + V+GK I++ + RDP QL W + G++IV+E TG F     A KH++AGAKKVII+APA   DI T V+GVNE  YD    N++SNA CTTNCLAPF KV++++ G+ +G +TT HSYT DQ
Sbjct:    3 VKIGINGFGRIGRNVFRA--ALKNDNVEVVAINDLTDANMLAHLLKYDSVHGKLDAEV-VVDGSNLVVNGKTIEISAERDPAQLSWGKQGVEIVVESTGFFTKRADAAKHLEAGAKKVIISAPASDEDI-TIVMGVNEDKYDAANHNVISNAPCTTNCLAPFAKVLNDKFGLKRGMMTTVHSYTNDQ 185          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_STRAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces arenae GN=gap PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.940e-46
Identity = 98/187 (52.41%), Postives = 122/187 (65.24%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +++ INGFGRIGRN  R    R  S L++V VND G V   +HLL YDS+LG F  +V   +   I V  + IKV++ RDP  LPW +LG+DIVIE TG+F D   A  H+  GAKKVII APA G D  T V+GVN+ DYD E   I+SNASCTTNCL    KV+ + +GI  G +TT H+YT DQ
Sbjct:    3 VRIGINGFGRIGRNVFRAAAARS-SELEIVAVNDLGDVPTMAHLLAYDSILGRFPEEVT-AEPGAIRVGDRTIKVLAERDPGALPWGDLGVDIVIESTGIFTDAAKARSHVDGGAKKVIIAAPASGEDF-TVVLGVNDGDYDPERHTIISNASCTTNCLGVLAKVLHDAVGIDSGMMTTVHAYTQDQ 186          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_THEMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermotoga maritima GN=gap PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 2.534e-46
Identity = 103/186 (55.38%), Postives = 125/186 (67.20%), Query Frame = 1
Query:  301 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +VAINGFGRIGR   R  + RK+  ++VV +ND    K  +HLLKYDS+   F   V+  +N  I VDGK IKV +  DP +LPW +LG+D VIE TGVF +   A  H+QAGAKKVIITAPAKG DI T V+G NE     E   I+S ASCTTN +AP VKV+ E+ GIV G +TT HSYT DQ
Sbjct:    3 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLI-VDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKGEDI-TVVIGCNEDQLKPE-HTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSYTNDQ 185          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_THEAQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermus aquaticus GN=gap PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 3.310e-46
Identity = 96/187 (51.34%), Postives = 126/187 (67.38%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +KV INGFGRIGR   R  H R    ++V ++ND    K  +HLLKYDS+   F  +V   D++ + VDGK I+  + +DP ++PWAE G+ +VIE TGVF D   A  H++ GAKKVIITAPAKG DI T V+GVN + YD    +I+SNASCTTN LAP +KV++E  G+ +  +TT HSYT DQ
Sbjct:    1 MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAY-DDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDI-TIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQ 182          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P2_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Bacillus subtilis GN=gapB PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.258e-45
Identity = 97/188 (51.60%), Postives = 127/188 (67.55%), Query Frame = 1
Query:  295 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            K+KVAINGFGRIGR   R      D  + VV +N S   +  +HL+KYD++ G +  +V +   +++ V+GK + ++++RDP QLPW E  IDIV+E TG F     A  HI+AGAKKVI+TAP K  D+ T V+GVNE  +D E   I+SNASCTTNCLAP VKV+DEE GI  G +TT H+YT DQ
Sbjct:    2 KVKVAINGFGRIGRMVFR--KAMLDDQIQVVAINASYSAETLAHLIKYDTIHGRYDKEV-VAGEDSLIVNGKKVLLLNSRDPKQLPWREYDIDIVVEATGKFNAKDKAMGHIEAGAKKVILTAPGKNEDV-TIVMGVNEDQFDAERHVIISNASCTTNCLAPVVKVLDEEFGIESGLMTTVHAYTNDQ 185          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.643e-45
Identity = 96/187 (51.34%), Postives = 126/187 (67.38%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +KV INGFGRIGRN  R      +  ++VV VND       +HLL+YDS+ G   A+V  VD   + V+GK I+V + RDP +L W + G++IV+E TG F     A KH++AGAKKVII+APA   DI T V+GVNE  YD    +++SNASCTTNCLAPF KV++++ GI +G +TT HSYT DQ
Sbjct:    3 VKVGINGFGRIGRNVFRA--ALNNPEVEVVAVNDLTDANMLAHLLQYDSVHGKLDAEVS-VDGNNLVVNGKTIEVSAERDPAKLSWGKQGVEIVVESTGFFTKRADAAKHLEAGAKKVIISAPANEEDI-TIVMGVNEDKYDAANHDVISNASCTTNCLAPFAKVLNDKFGIKRGMMTTVHSYTNDQ 185          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_MYCAV (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium avium GN=gapA PE=3 SV=3)

HSP 1 Score: 181.415 bits (459), Expect = 6.242e-45
Identity = 97/191 (50.79%), Postives = 128/191 (67.02%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKD---SPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD-PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            ++V INGFGRIGRNF R    +++   + ++VV VND       +HLLK+DS+LG    DV +   +TI V    IK +  R+ P  LPW +LG+D+V+E TG+F +   A  H+ AGAKKVII+APA   DI T V+GVN+  YD    NI+SNASCTTNCLAP  KV+D+E GIV+G +TT H+YT DQ
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEQGTADIEVVAVNDITDNSTLAHLLKFDSILGRLPYDVSLEGEDTIVVGPAKIKALEVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAKKVIISAPATDEDI-TVVLGVNDDKYDGS-QNIISNASCTTNCLAPLTKVLDDEFGIVRGLMTTIHAYTQDQ 191          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_MYCTU (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium tuberculosis GN=gap PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.391e-44
Identity = 96/191 (50.26%), Postives = 129/191 (67.54%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKD---SPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD-PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            ++V INGFGRIGRNF R    +++   + ++VV  ND       +HLLK+DS+LG    DV +  ++TI V    IK ++ R+ P  LPW +LG+D+V+E TG+F +   A  H+ AGAKKVII+APA   DI T V+GVN+  YD    NI+SNASCTTNCLAP  KV+D+E GIV+G +TT H+YT DQ
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEQGTADVEVVAANDITDNSTLAHLLKFDSILGRLPCDVGLEGDDTIVVGRAKIKALAVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAKKVIISAPATDEDI-TIVLGVNDDKYDGS-QNIISNASCTTNCLAPLAKVLDDEFGIVKGLMTTIHAYTQDQ 191          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_MYCBO (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium bovis GN=gap PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.391e-44
Identity = 96/191 (50.26%), Postives = 129/191 (67.54%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKD---SPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD-PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            ++V INGFGRIGRNF R    +++   + ++VV  ND       +HLLK+DS+LG    DV +  ++TI V    IK ++ R+ P  LPW +LG+D+V+E TG+F +   A  H+ AGAKKVII+APA   DI T V+GVN+  YD    NI+SNASCTTNCLAP  KV+D+E GIV+G +TT H+YT DQ
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEQGTADVEVVAANDITDNSTLAHLLKFDSILGRLPCDVGLEGDDTIVVGRAKIKALAVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAKKVIISAPATDEDI-TIVLGVNDDKYDGS-QNIISNASCTTNCLAPLAKVLDDEFGIVKGLMTTIHAYTQDQ 191          
The following BLAST results are available for this feature:
BLAST of CX047566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_CORGL6.669e-4753.48Glyceraldehyde-3-phosphate dehydrogenase OS=Coryne... [more]
G3P_BACME6.669e-4750.80Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_STRAE1.940e-4652.41Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_THEMA2.534e-4655.38Glyceraldehyde-3-phosphate dehydrogenase OS=Thermo... [more]
G3P_THEAQ3.310e-4651.34Glyceraldehyde-3-phosphate dehydrogenase OS=Thermu... [more]
G3P2_BACSU1.258e-4551.60Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Baci... [more]
G3P1_BACSU1.643e-4551.34Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_MYCAV6.242e-4550.79Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MYCTU1.391e-4450.26Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MYCBO1.391e-4450.26Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14H07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14H07-P13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047566 ID=CX047566; Name=CX047566; organism=Citrus sinensis; type=EST; length=917bp
TTTAGAAGTTGCAGCAAATCAGCAACTAAGCCACAGGCCATGGCCAGTCA
CTCAGCTCTTGCTCCCTCAAGAATCCCGGCCATCACTAGGATTCCATCCA
AGACTACTCACTCTTTTCCCACTCAATGCTCCACCAAGAGGCTGGATGTG
GCTGAATTCGCTGGCCTTCGAGCAAATGCAGGCGCGACATACGCCACTGG
TGCTAGAGATGCATCCTTCTTTGATGCTGTGACTGCTCAACTTACTCCTA
AGGTTGCAGCAGGATCAGTTCCTGTAAAGAAAGAAACCGTGGCCAAATTG
AAGGTGGCAATTAATGGATTTGGACGTATTGGCAGGAACTTCCTCCGATG
CTGGCACGGCAGGAAAGACTCACCCCTTGATGTTGTTGTTGTCAATGACA
GTGGTGGTGTCAAGAATGCTTCACACCTTCTAAAATATGACTCATTGCTT
GGAACTTTTAAAGCAGACGTGAAAATAGTGGACAACGAGACCATCTCTGT
CGATGGTAAGCTCATCAAGGTTGTCTCTAACAGGGACCCTCTCCAGCTCC
CTTGGGCTGAGCTCGGAATTGACATCGTTATTGAGGGAACAGGAGTTTTT
GTGGACGGCCCTGGTGCTGGAAAGCACATCCAAGCTGGTGCCAAGAAAGT
TATTATCACTGCTCCAGCAAAAGGTGCAGACATTCCAACCTATGTCGTTG
GAGTTAACGAGAAGGATTACGATCACGAGGTTGCAAACATTGTGAGCAAT
GCTTCTTGCACCACAAACTGTTTGGCTCCTTTTGTGAAGGTCATGGATGA
AGAATTGGGGATTGTNCAGGGAGCGATTACAACTACTCACTCCTACACTG
GAGACCAGAGGCTCTTGGATGCTTCACACAGGGACTTGAGGAGAGCGAGA
GCTGCAGCGTTGAACAT
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