CX047566

Overview
NameCX047566
Unique NameCX047566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.896e-40
Identity = 87/192 (45.31%), Postives = 128/192 (66.67%), Query Frame = 1
Query:  289 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKA-DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +AK+K+ INGFGRIGR   R     +   +++V VND        +++ KYD++ G +K  +VK+ D++T+    K + V   R+P ++PW  +G + V+E TGVF D   A  H++ GAKKV+I+AP+K  D P +VVGVNEK+Y  ++ NIVSNASCTTNCLAP  KV++++ GIV+G +TT H+ T  Q
Sbjct:    1 MAKIKIGINGFGRIGRLVARV--ALQSDDVELVAVNDPFISTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWGSVGAEYVVESTGVFTDQEKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEKEYKSDI-NIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHAITATQ 187          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.896e-40
Identity = 97/188 (51.60%), Postives = 121/188 (64.36%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +++AINGFGRIGR  LR    R  S ++VV VND     + A+++ KYDS  G +  +V   D++ I +DGK I V   RDP  LPW    IDI I+ TGVF +   A KHI AGAKKV+ITAP+  A  P +VVGVNE  Y  ++  IVSNASCTTNCLAP  KV+DE  GI +G +TT HS T  Q
Sbjct:    2 VRIAINGFGRIGRLVLRVALSR--SNIEVVAVNDPFITTDYAAYMFKYDSTHGRYAGEVTH-DDKHIIIDGKKIAVHQERDPANLPWGSENIDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTA--PMFVVGVNEDKYTSDL-KIVSNASCTTNCLAPLAKVIDEAFGIEEGLMTTVHSLTATQ 183          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.031e-39
Identity = 91/188 (48.40%), Postives = 124/188 (65.96%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +KV INGFGRIGR   R  +  +   ++VV VND     + A+++LKYDS  G FK ++K  D + + V+GK +K  + RDP  +PW   G + ++E TGVF     A  H+  GAKKVII+AP+  AD P YV+GVNEK YD + A+++SNASCTTNCLAP  KV+ ++  IV+G +TT HSYT  Q
Sbjct:    3 VKVGINGFGRIGRIVFR--NAVEHPEIEVVAVNDPFIDPEYAAYMLKYDSSHGVFKGEIK-KDADGLIVNGKKVKFHTERDPSAIPWKASGAEYIVESTGVFTTTEKAKAHLTGGAKKVIISAPS--ADAPMYVMGVNEKTYDGK-ADVISNASCTTNCLAPLAKVIHDKYTIVEGLMTTVHSYTATQ 184          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 1.031e-39
Identity = 90/190 (47.37%), Postives = 124/190 (65.26%), Query Frame = 1
Query:  295 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKA-DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            K+K+ INGFGRIGR   R    R D  +++V VND     +  +++ KYDS+ G +K  ++K+ D +T+    K + V   R+P  +PW E G D V+E TGVF D   A  H++ GAKKV+I+AP+K  D P +VVGVNE +Y  ++ NIVSNASCTTNCLAP  KV+++  GIV+G +TT HS T  Q
Sbjct:    5 KIKIGINGFGRIGRLVARVILQRND--VELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEHEYKSDL-NIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQ 189          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 1.031e-39
Identity = 89/187 (47.59%), Postives = 119/187 (63.64%), Query Frame = 1
Query:  301 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            KV INGFGRIGR  LR  +  +   ++VV +ND     + A ++ KYDS  G FK D+K VD + + +DGK IK    RDP  +PW + G + ++E TGVF     A  H + GAKKVII+AP+  AD P YV+GVNE  Y    AN++SNASCTTNCLAP  K ++++  IV+G +T  H+YT  Q
Sbjct:    4 KVGINGFGRIGRVVLR--NALETGAVEVVALNDPFIEPHYAEYMFKYDSTHGRFKGDIK-VDGKDLVIDGKRIKFYQERDPANIPWKDSGAEYIVESTGVFTTTEKASAHFKGGAKKVIISAPS--ADAPMYVMGVNEDTY--AGANVISNASCTTNCLAPLAKTLNDKFTIVEGLMTAIHAYTASQ 183          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_PSEAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudomonas aeruginosa GN=gap PE=3 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 1.347e-39
Identity = 95/192 (49.48%), Postives = 121/192 (63.02%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWH-GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVA----NIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +++AINGFGRIGRN LR  + G     L VV +ND G     +HL +YDS+ G F  +V+  D E++ V G  I V + R+P +LPW  LG+DIV+E TG+F     A  H+QAGA KV+I+AP K  +  T V GVN     HEV      IVSNASCTTNCLAP  +V+  ELGI  G +TT H+YT DQ
Sbjct:    3 IRLAINGFGRIGRNVLRALYTGHYREQLQVVAINDLGDAAVNAHLFQYDSVHGHFPGEVEH-DAESLRVMGDRIAVSAIRNPAELPWKSLGVDIVLECTGLFTSRDKAAAHLQAGAGKVLISAPGKDVE-ATVVYGVN-----HEVLRASHRIVSNASCTTNCLAPVAQVLHRELGIEHGLMTTIHAYTNDQ 187          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.347e-39
Identity = 88/187 (47.06%), Postives = 120/187 (64.17%), Query Frame = 1
Query:  301 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            KV INGFGRIGR   R  +      +DVV VND       A+++LKYDS  G FK  ++  + E + V+GK I+  + RDP  +PW   G D ++E TGVF     A  H++ GAKKV+I+AP+  AD P +V+GVN   Y  ++ N++SNASCTTNCLAP  KV++++ GIV+G +TT HSYT  Q
Sbjct:    4 KVGINGFGRIGRIVFR--NAINHGEVDVVAVNDPFIETHYAAYMLKYDSTHGQFKGTIETYE-EGLIVNGKKIRFFAERDPAAIPWGTTGADYIVESTGVFTTQEKAAAHLKGGAKKVVISAPS--ADAPMFVMGVNNTSYTKDI-NVLSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSYTATQ 184          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.347e-39
Identity = 95/188 (50.53%), Postives = 120/188 (63.83%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            ++VAINGFGRIGR  LR    R +  ++VV +ND    V  A+++ KYDS  G F  +V   +N  I +DGK + V   RDP  LPW E  +DI I+ TGVF +   A KHI AGAKKV+ITAP+  A  P +VVGVNE  Y+ E   IVSNASCTTNCLAP  KV++   GI +G ++T HS T  Q
Sbjct:    2 VRVAINGFGRIGRLVLRIALSRPN--VEVVAINDPFISVDYAAYMFKYDSTHGRFAGEVSHDENSLI-IDGKKVLVFQERDPATLPWGEHNVDIAIDSTGVFKELDSAQKHIDAGAKKVVITAPSSTA--PMFVVGVNEDKYNGE--TIVSNASCTTNCLAPLAKVVNNAFGIEEGLMSTIHSITATQ 182          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.759e-39
Identity = 90/188 (47.87%), Postives = 121/188 (64.36%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +KV INGFGRIGR  LR  +  K+  ++VV VND     + A+++ KYDS  G FK  V+  D   I +DGK I+V   RDP  +PW + G D V+E TGVF     A  H++ GAKKVII+AP+   D P +VVGVN   Y  ++  ++SNASCTTNCLAP  KV++++ GI++G +TT HS T  Q
Sbjct:    3 IKVGINGFGRIGRIVLR--NALKNPEVEVVAVNDPFIDTEYAAYMFKYDSTHGRFKGKVEAKDGGLI-IDGKHIQVFGERDPSNIPWGKAGADYVVESTGVFTGKEAASAHLKGGAKKVIISAPS--GDAPMFVVGVNLDAYKPDM-TVISNASCTTNCLAPLAKVVNDKYGIIEGLMTTVHSITATQ 184          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.759e-39
Identity = 91/186 (48.92%), Postives = 122/186 (65.59%), Query Frame = 1
Query:  304 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            V INGFGRIGR  LR    R D  ++V+ +ND     + A+++ KYDS  G FK  V   + + + ++GK I+V   RDP  +PW + G+D V++ TGVF    GA KHI AGAKKVIITAP+K  D P +VVGVN ++Y  ++  I+SNASCTTNCLAP  KV+++  GI +G +TT HS T  Q
Sbjct:    5 VGINGFGRIGRLVLRIALSRDD--INVIAINDPFIAPDYAAYMFKYDSTHGKFKGTVTH-EGKYLVINGKKIEVFQERDPANIPWGKEGVDYVLDSTGVFTTIEGAQKHIDAGAKKVIITAPSK--DAPMFVVGVNHEEYTPDI-KILSNASCTTNCLAPLAKVINDIFGIEEGLMTTVHSITATQ 184          
The following BLAST results are available for this feature:
BLAST of CX047566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3PE_MAIZE7.896e-4045.31Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_CANGA7.896e-4051.60Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P_CLAPU1.031e-3948.40Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]
G3PC_SINAL1.031e-3947.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_TRIKO1.031e-3947.59Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P_PSEAE1.347e-3949.48Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudo... [more]
G3P_ASPNG1.347e-3947.06Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P2_KLULA1.347e-3950.53Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_YARLI1.759e-3947.87Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_PICAN1.759e-3948.92Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14H07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14H07-P13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047566 ID=CX047566; Name=CX047566; organism=Citrus sinensis; type=EST; length=917bp
TTTAGAAGTTGCAGCAAATCAGCAACTAAGCCACAGGCCATGGCCAGTCA
CTCAGCTCTTGCTCCCTCAAGAATCCCGGCCATCACTAGGATTCCATCCA
AGACTACTCACTCTTTTCCCACTCAATGCTCCACCAAGAGGCTGGATGTG
GCTGAATTCGCTGGCCTTCGAGCAAATGCAGGCGCGACATACGCCACTGG
TGCTAGAGATGCATCCTTCTTTGATGCTGTGACTGCTCAACTTACTCCTA
AGGTTGCAGCAGGATCAGTTCCTGTAAAGAAAGAAACCGTGGCCAAATTG
AAGGTGGCAATTAATGGATTTGGACGTATTGGCAGGAACTTCCTCCGATG
CTGGCACGGCAGGAAAGACTCACCCCTTGATGTTGTTGTTGTCAATGACA
GTGGTGGTGTCAAGAATGCTTCACACCTTCTAAAATATGACTCATTGCTT
GGAACTTTTAAAGCAGACGTGAAAATAGTGGACAACGAGACCATCTCTGT
CGATGGTAAGCTCATCAAGGTTGTCTCTAACAGGGACCCTCTCCAGCTCC
CTTGGGCTGAGCTCGGAATTGACATCGTTATTGAGGGAACAGGAGTTTTT
GTGGACGGCCCTGGTGCTGGAAAGCACATCCAAGCTGGTGCCAAGAAAGT
TATTATCACTGCTCCAGCAAAAGGTGCAGACATTCCAACCTATGTCGTTG
GAGTTAACGAGAAGGATTACGATCACGAGGTTGCAAACATTGTGAGCAAT
GCTTCTTGCACCACAAACTGTTTGGCTCCTTTTGTGAAGGTCATGGATGA
AGAATTGGGGATTGTNCAGGGAGCGATTACAACTACTCACTCCTACACTG
GAGACCAGAGGCTCTTGGATGCTTCACACAGGGACTTGAGGAGAGCGAGA
GCTGCAGCGTTGAACAT
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