CX047566

Overview
NameCX047566
Unique NameCX047566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.759e-39
Identity = 89/191 (46.60%), Postives = 122/191 (63.87%), Query Frame = 1
Query:  289 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +A  KV INGFGRIGR   R  +      +DVV VND       A+++LKYDS  G F+  ++  D E + V+GK I+  + RDP  +PW   G   ++E TGVF     A  H++ GAKKVII+AP+  AD P +V+GVN K+Y  ++ N++SNASCTTNCLAP  KV+++  G+V+G +TT HSYT  Q
Sbjct:    1 MATPKVGINGFGRIGRIVFR--NAIASGDVDVVAVNDPFIETHYAAYMLKYDSTHGRFQGTIETYD-EGLIVNGKKIRFFAERDPAAIPWGSAGAAYIVESTGVFTTTEKASAHLKGGAKKVIISAPS--ADAPMFVMGVNNKEYKTDI-NVLSNASCTTNCLAPLAKVINDNFGLVEGLMTTVHSYTATQ 185          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.759e-39
Identity = 87/192 (45.31%), Postives = 126/192 (65.62%), Query Frame = 1
Query:  289 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFK-ADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            + K+K+ INGFGRIGR   R     +   +++V VND     +  +++ KYD++ G +K +D+K+ D++T+    K + V   R+P ++PW E G D V+E TGVF D   A  H++ GAKKV+I+AP+K  D P +VVGVNE  Y  +V NIVSNASCTTNCLAP  KV+++  GI++G +TT H+ T  Q
Sbjct:    1 MGKIKIGINGFGRIGRLVARV--ALQSDDVELVAVNDPFITTEYMTYMFKYDTVHGHWKHSDIKLKDDKTLLFGEKPVTVFGVRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEDKYTSDV-NIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAITATQ 187          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.759e-39
Identity = 90/192 (46.88%), Postives = 127/192 (66.15%), Query Frame = 1
Query:  289 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKA-DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +AK+K+ INGFGRIGR   R    R D  +++V VND    V   +++ KYD++ G +K  ++K+ D +T+    K + V   R+P ++PWAE G + V+E TGVF +   A  H++ GAKKVII+AP+K  D P +VVGVNEK Y  ++ ++VSNASCTTNCLAP  KV+ +  GIV+G +TT HS T  Q
Sbjct:    1 MAKVKIGINGFGRIGRLVARVALVRDD--VELVAVNDPFITVDYMAYMFKYDTVHGQYKHHELKVKDEKTLLFGDKPVAVFGLRNPEEIPWAETGAEYVVESTGVFTEKEKAAAHLKGGAKKVIISAPSK--DAPMFVVGVNEKTYTPDI-DVVSNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHSITATQ 187          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.759e-39
Identity = 87/187 (46.52%), Postives = 120/187 (64.17%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +KV INGFGRIGR   R    +K S +++V +ND       +++LKYDS  G F   V++ D   I V+GK I+V + RDP  L W E+G+D+V E TG+F+    A KHI AGAKKV++T P+K  + P +V G N   Y  +  +IVSNASCTTNCLAP  KV+++  GI++G +TT H+ T  Q
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLI-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKD-NTPMFVKGANFDKYAGQ--DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQ 183          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.000e-39
Identity = 89/187 (47.59%), Postives = 124/187 (66.31%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +KV INGFGRIGR  LR    +++S ++V+ +ND       ++L K+DS  G F  DV+   +  I V  + I+ +S R+   LPW +LG+D+VIE TG+F     A KHIQAGAK+V+I+AP KG DIPT+V+GVN K ++ E   ++SNASCTTNCLAP  KV+ +  GI +G +TT H+ T  Q
Sbjct:    1 MKVVINGFGRIGRLVLRQIL-KRNSSVEVLAINDLVPGDALTYLFKFDSTHGRFPEDVRCEADHLI-VGKRKIQFLSERNVQNLPWKDLGVDLVIECTGLFTKKEDAEKHIQAGAKRVLISAPGKG-DIPTFVMGVNHKTFNPEKDFVISNASCTTNCLAPIAKVLLDNFGITEGLMTTVHAATATQ 184          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_CHLMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia muridarum GN=gap PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.000e-39
Identity = 83/187 (44.39%), Postives = 125/187 (66.84%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +++ INGFGRIGR  LR    ++++P++VV +ND       ++L KYDS  G+F +     D   + V  + I+ ++ +D  +LPW +L +D+V+E TG+FV+   A KH+ +GAK+V+ITAPAKG D+PT+V+GVN + +D     I+SNASCTTNCLAP  KV+ +  GI +G +TT H+ T  Q
Sbjct:    1 MRIVINGFGRIGRLVLRQIL-KRNAPIEVVAINDLVSGDLLTYLFKYDSTHGSFASQATFSDG-CLVVGERKIRFLAEKDVQKLPWKDLDVDVVVESTGLFVNKDDAAKHLDSGAKRVLITAPAKG-DVPTFVMGVNHQKFDPANDVIISNASCTTNCLAPLAKVLLDNFGIEEGLMTTVHAATATQ 184          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 3.000e-39
Identity = 86/187 (45.99%), Postives = 122/187 (65.24%), Query Frame = 1
Query:  298 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +KV INGFGRIGR   R    R D  +++V +ND    +  ++ LKYDS  G F   V+++    + V+GK I+V S RDP  L W E+G+++V+E TG+F+    A KHI+AGA++V++T P K  D P +V+GVN   Y  +   I+SNASCTTNCLAP  KV++E+ GIV+G +TT H+ T  Q
Sbjct:    2 VKVGINGFGRIGRVVFRAAQMRPD--IEIVGINDLLDAEYMAYSLKYDSTHGRFDGTVEVIKGALV-VNGKSIRVTSERDPANLKWDEIGVEVVVESTGLFLTQETAHKHIEAGARRVVMTGPPKD-DTPMFVMGVNHTTYKGQ--PIISNASCTTNCLAPLAKVVNEKYGIVEGLMTTVHATTATQ 182          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P2_STAES (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.000e-39
Identity = 85/185 (45.95%), Postives = 119/185 (64.32%), Query Frame = 1
Query:  304 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +AING GRIGR  LR     K+  L+V  +N S   +  +HLL YD+  G +   V+ +++  I V+G  IK++S+R+P  LPW E+ ID+VIE TG F  G  A  HI AGAKKV++T P+KG D+   V GVN+   D +  +I SNASCTTNC+ P  KV++++ GI+ G +TT H+ T DQ
Sbjct:    5 IAINGMGRIGRMVLRIALNNKN--LNVKAINASYPPETIAHLLNYDTTHGVYDKKVEPIESG-IKVNGHEIKLLSDRNPENLPWNEMDIDVVIEATGKFNHGDKAVAHINAGAKKVLLTGPSKGGDVQMIVKGVNDNQLDIDTYDIFSNASCTTNCIGPVAKVLNDKFGIINGLMTTVHAITNDQ 186          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P2_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.000e-39
Identity = 85/185 (45.95%), Postives = 119/185 (64.32%), Query Frame = 1
Query:  304 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +AING GRIGR  LR     K+  L+V  +N S   +  +HLL YD+  G +   V+ +++  I V+G  IK++S+R+P  LPW E+ ID+VIE TG F  G  A  HI AGAKKV++T P+KG D+   V GVN+   D +  +I SNASCTTNC+ P  KV++++ GI+ G +TT H+ T DQ
Sbjct:    5 IAINGMGRIGRMVLRIALNNKN--LNVKAINASYPPETIAHLLNYDTTHGVYDKKVEPIESG-IKVNGHEIKLLSDRNPENLPWNEMDIDVVIEATGKFNHGDKAVAHINAGAKKVLLTGPSKGGDVQMIVKGVNDNQLDIDTYDIFSNASCTTNCIGPVAKVLNDKFGIINGLMTTVHAITNDQ 186          
BLAST of CX047566 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.919e-39
Identity = 86/191 (45.03%), Postives = 127/191 (66.49%), Query Frame = 1
Query:  289 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVQGAITTTHSYTGDQ 858
            +A +KV INGFGRIGR   R  +  +   ++VV VND     + A+++LKYDS  G F  D++ V++  + V+ + +K  + R+P ++PWAE G + ++E TGVF     A  H++ GAKKVII+AP+  AD P +V+GVN K Y  ++  ++SNASCTTNCLAP  KV+++E  I++G +TT HSYT  Q
Sbjct:    1 MAPIKVGINGFGRIGRIVFR--NAAQSCEVEVVAVNDPFIEPEYAAYMLKYDSTHGQFNGDIQTVEDGLV-VNSRNVKFYNKRNPEEIPWAETGAEYIVESTGVFTTTEKAKAHLKGGAKKVIISAPS--ADAPMFVMGVNHKSYTTDL-EVISNASCTTNCLAPLAKVINDEFTIIEGLMTTIHSYTATQ 185          
The following BLAST results are available for this feature:
BLAST of CX047566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_ASPOR1.759e-3946.60Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3PX_HORVU1.759e-3945.31Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CRAPL1.759e-3946.88Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_ESCF31.759e-3946.52Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_CHLPN3.000e-3947.59Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P_CHLMU3.000e-3944.39Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3PC_LEIME3.000e-3945.99Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_STAES3.000e-3945.95Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAEQ3.000e-3945.95Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P_ERYGR3.919e-3945.03Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14H07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14H07-P13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047566 ID=CX047566; Name=CX047566; organism=Citrus sinensis; type=EST; length=917bp
TTTAGAAGTTGCAGCAAATCAGCAACTAAGCCACAGGCCATGGCCAGTCA
CTCAGCTCTTGCTCCCTCAAGAATCCCGGCCATCACTAGGATTCCATCCA
AGACTACTCACTCTTTTCCCACTCAATGCTCCACCAAGAGGCTGGATGTG
GCTGAATTCGCTGGCCTTCGAGCAAATGCAGGCGCGACATACGCCACTGG
TGCTAGAGATGCATCCTTCTTTGATGCTGTGACTGCTCAACTTACTCCTA
AGGTTGCAGCAGGATCAGTTCCTGTAAAGAAAGAAACCGTGGCCAAATTG
AAGGTGGCAATTAATGGATTTGGACGTATTGGCAGGAACTTCCTCCGATG
CTGGCACGGCAGGAAAGACTCACCCCTTGATGTTGTTGTTGTCAATGACA
GTGGTGGTGTCAAGAATGCTTCACACCTTCTAAAATATGACTCATTGCTT
GGAACTTTTAAAGCAGACGTGAAAATAGTGGACAACGAGACCATCTCTGT
CGATGGTAAGCTCATCAAGGTTGTCTCTAACAGGGACCCTCTCCAGCTCC
CTTGGGCTGAGCTCGGAATTGACATCGTTATTGAGGGAACAGGAGTTTTT
GTGGACGGCCCTGGTGCTGGAAAGCACATCCAAGCTGGTGCCAAGAAAGT
TATTATCACTGCTCCAGCAAAAGGTGCAGACATTCCAACCTATGTCGTTG
GAGTTAACGAGAAGGATTACGATCACGAGGTTGCAAACATTGTGAGCAAT
GCTTCTTGCACCACAAACTGTTTGGCTCCTTTTGTGAAGGTCATGGATGA
AGAATTGGGGATTGTNCAGGGAGCGATTACAACTACTCACTCCTACACTG
GAGACCAGAGGCTCTTGGATGCTTCACACAGGGACTTGAGGAGAGCGAGA
GCTGCAGCGTTGAACAT
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