CX047557

Overview
NameCX047557
Unique NameCX047557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: DRS7B_XENLA (Dehydrogenase/reductase SDR family member 7B OS=Xenopus laevis GN=dhrs7b PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.473e-18
Identity = 68/233 (29.18%), Postives = 120/233 (51.50%), Query Frame = 1
Query:  145 VVIITGASSGIGEHLAYEYXXXXXXXXXXXXXEKSLEEVADT-------AREIGSPDVITIRADVSKVDDCRSLVEETMNHFGRLDHLVNNAGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVPHL-RYTKGKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVELGS-DVGVTIVTPGFIESELTQGKFL-TGEGRIQIDENLRDAQVSTIPVQSAWSCAKAI 813
            VV+ITGA+SG+G+  A  +             E+ L+++          + ++  P ++    D+S V+   +  +E ++  GR+D L+NNAGIS      D     D + +M+ N++G V  T+  +P + +  +G +VV+SS    ++ P  S Y+ASK A   FF+ LR E+   D+ VT+V PG+I++ L+       G G   +D+N  D +    P + A +  +A+
Sbjct:   38 VVVITGATSGLGKECAKVFYAAGSHLVLCGRDEERLKDLVQELNNMRLKSTQLHKPHMVIF--DLSDVEAVNTAAKEILHLAGRVDILINNAGISYRGTILDTKVSVD-RMVMDTNYFGPVALTKALLPSMIKNRRGHVVVISSVQGKISIPFRSAYSASKHATQAFFDCLRAEMSPYDIDVTVVNPGYIKTNLSLNAVTGDGSGYGVMDKNTADGRT---PEEVAQTVLRAV 264          
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: DHI1_MOUSE (Corticosteroid 11-beta-dehydrogenase isozyme 1 OS=Mus musculus GN=Hsd11b1 PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.924e-18
Identity = 62/194 (31.96%), Postives = 99/194 (51.03%), Query Frame = 1
Query:  127 EDVSGKVVIITGASSGIGEHLAYEYXXXXXXXXXXXXXEKSLEEVADTAREIGSPDVITIRADVSKVDDCRSLVEETMNHFGRLDHLV-NNAGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVPHLRYTKGKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVEL---GSDVGVTIVTPGFIESE 696
            E + GK VI+TGAS GIG  +AY               E+ L++V     E+G+     I   +  +      + +     G LD L+ N+   +S++LF D  +I   +++M +NF   V  +  A+P L+ + G I V+SS A  +T P ++ Y+ASK AL  FF T+R EL     +V +T+   G I++E
Sbjct:   30 EMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHD--DIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKMTQPMIAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTE 221          
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: DRS7B_XENTR (Dehydrogenase/reductase SDR family member 7B OS=Xenopus tropicalis GN=dhrs7b PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.513e-18
Identity = 64/204 (31.37%), Postives = 107/204 (52.45%), Query Frame = 1
Query:  145 VVIITGASSGIGEHLAYEYXXXXXXXXXXXXXEKSLEEVADT-------AREIGSPDVITIRADVSKVDDCRSLVEETMNHFGRLDHLVNNAGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVPHL-RYTKGKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVELGS-DVGVTIVTPGFIESELTQGKFLTGEG 729
            VV+ITGA+SG+G   A  +             E+ L+ +          + ++  P ++    D+S V+   S   E ++  GR+D L+NNAGIS      D     D + +M+ N++G V  T+  +P + +  +G IVV+SS    ++ P  S Y+ASK A   FF+ LR E+   ++ VT+V PG+I++ L+    +TG+G
Sbjct:   38 VVVITGATSGLGRECAKVFYAAGTRLVLCGRSEEGLKNLVQELSQMRIKSAQLHKPHMVIF--DLSDVEAVNSAANEILHLTGRVDILINNAGISYRGTILDTKVSVD-RMVMDTNYFGPVALTKALIPSMIKNRRGHIVVISSVQGKISIPFRSAYSASKHATQAFFDCLRAEMSPYEIDVTVVNPGYIKTNLSLNA-VTGDG 237          
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: DRS7B_RAT (Dehydrogenase/reductase SDR family member 7B OS=Rattus norvegicus GN=Dhrs7b PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.287e-18
Identity = 66/195 (33.85%), Postives = 103/195 (52.82%), Query Frame = 1
Query:  145 VVIITGASSGIGEHLAYEYXXXXXXXXXXXXXEKSLEE----VADTAREIGS---PDVITIRADVSKVDDCRSLVEETMNHFGRLDHLVNNAGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVPHLRYTK-GKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVEL-GSDVGVTIVTPGFIESELT 702
            VV++TGA+SG+G+  A  +              K+LEE    +AD++   G    P V+T   D++          E +  FG +D L+NNAGIS      D +   D +++M IN++G V  T+  +P +   K G IV +SS    ++ P  S Y ASK A   FF+ LR E+  SD+ VT+++PG+I + L+
Sbjct:   54 VVVVTGATSGLGKECARVFHAAGAKVVLCGRNVKALEEFTRELADSSSSQGQTHQPCVVTF--DLADPGAIAPAAAEILQCFGYVDILINNAGISYRGAISDTIVDVD-RKVMEINYFGPVALTKALLPSMVERKRGHIVAISSIQGKISIPFRSAYAASKHATQAFFDCLRAEMKDSDIEVTVISPGYIHTNLS 245          
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: DHI1B_XENLA (Hydroxysteroid 11-beta-dehydrogenase 1-like protein B OS=Xenopus laevis GN=hsd11b1l-B PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.287e-18
Identity = 62/199 (31.16%), Postives = 103/199 (51.76%), Query Frame = 1
Query:  115 SIFSEDVSGKVVIITGASSGIGEHLAYEYXXXXXXXXXXXXXEKSLEEVADTAREIGSPDVITIRADVSKVDDCRSLVEETMNHFGRLDHLVNN--AGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVPHLRYTKGKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVEL---GSDVGVTIVTPGFIESE 696
            S+  E V GK V+ITG+S+G+GE +AYE+              + L+EVA    ++G+     + +D+  ++  +S+ +E +   G LD+LV N   G      F+   ++        +NF   V  T  A+  L+ ++G IVV+SS +  + AP  + Y ASK AL  F+ +LR E     S + VT+   G+I++E
Sbjct:   25 SMNKESVRGKRVLITGSSTGLGEQIAYEFARMGAHIMITARRLQQLQEVASQCMKLGAASAHYVASDMGNLESAQSVAQEAVVKLGGLDYLVLNHIGGSGGFGFFKG--DMDPVVGSTTVNFLSYVQLTSSALSALQESQGSIVVISSMSGRIGAPFTTSYCASKFALEGFYSSLRREFALQNSKMSVTVAVLGYIDTE 221          
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: DHI1L_DANRE (Hydroxysteroid 11-beta-dehydrogenase 1-like protein OS=Danio rerio GN=hsd11b1l PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.312e-18
Identity = 66/203 (32.51%), Postives = 101/203 (49.75%), Query Frame = 1
Query:  115 SIFSEDVSGKVVIITGASSGIGEHLAYEYXXXXXXXXXXXXXEKSLEEVADTAREIGSPDVITIRADVSKVDDCRSLVEETMNHFGRLDHLV-NNAGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVPHLRYTKGKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVELG---SDVGVTIVTPGFIESELTQGK 711
            S   E + G  V++TGAS+GIGE LAY Y                LE+V    RE+G+     I AD++   D   +V+  +   G LD+LV N+ G S   +++  V  T  + ++ +NF   +   + A+P L  +KG IVV+SS    +  P    Y ++K AL  FF  L+ EL    S+V +TI   G I+++    K
Sbjct:   25 SFNEESLKGARVLVTGASTGIGEQLAYHYARLGAQIVITARRGNVLEQVVSKCREMGAQKAFYIPADMANPSDADLVVKYAIEQLGGLDYLVLNHIGPSPYQMWDGDVQHT--RWLLEVNFLSYLQMAQKALPTLEKSKGSIVVVSSLLGKICGPFALPYASTKFALNGFFGGLQNELAMQKSNVSITICILGLIDTDSAMEK 225          
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: DHI1_RAT (Corticosteroid 11-beta-dehydrogenase isozyme 1 OS=Rattus norvegicus GN=Hsd11b1 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.550e-18
Identity = 62/194 (31.96%), Postives = 98/194 (50.52%), Query Frame = 1
Query:  127 EDVSGKVVIITGASSGIGEHLAYEYXXXXXXXXXXXXXEKSLEEVADTAREIGSPDVITIRADVSKVDDCRSLVEETMNHFGRLDHLV-NNAGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVPHLRYTKGKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVE---LGSDVGVTIVTPGFIESE 696
            E + GK VI+TGAS GIG  +AY               E+ L++V     E+G+     I   +  +      V E     G LD L+ N+   ++++LF D  +I   ++ M +NF   V  +  A+P L+ + G I ++SS A  +T P ++ Y+ASK AL  FF T+R E      +V +T+   GFI++E
Sbjct:   26 EMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMAFAERFVVEAGKLLGGLDMLILNHITQTTMSLFHD--DIHSVRRSMEVNFLSYVVLSTAALPMLKQSNGSIAIISSMAGKMTQPLIASYSASKFALDGFFSTIRKEHLMTKVNVSITLCVLGFIDTE 217          
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: Y2049_STAEQ (Uncharacterized oxidoreductase SERP2049 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP2049 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.247e-17
Identity = 61/214 (28.50%), Postives = 118/214 (55.14%), Query Frame = 1
Query:  133 VSGKVVIITGASSGIGEHLAYEYXXXXXXXXXXXXXEKSLEEVADTAREIGSPDVITIRADVSKVDDCRSLVEETMNHFGRLDHLVNNAGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVPH-LRYTKGKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVELG-SDVGVTIVTPGFIESELTQGKFLTGEGRIQIDENLRDAQV 768
            V  KV ++TGASSGIGE +A +              E+ L E+   A+++ +P  + + ADV+   +   +++  ++HFG +D +VN+AG S  +   D  N+  +  ++++N  G+++  +  +P+ L+ + G I+ L+S + +      + Y A+KAA+    ++L  EL  + V VT ++PG +++ +T+G    GE +    +N+ DA V
Sbjct:    4 VKEKVAVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEI---AQQLNTPAKV-VSADVTVKSNIDDMLKAVIDHFGHIDIVVNSAGQSLSSKITD-YNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMVDTPMTEGTDF-GERKKLEAQNIADAVV 211          
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: Y2036_STAES (Uncharacterized oxidoreductase SE_2036 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2036 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.247e-17
Identity = 61/214 (28.50%), Postives = 118/214 (55.14%), Query Frame = 1
Query:  133 VSGKVVIITGASSGIGEHLAYEYXXXXXXXXXXXXXEKSLEEVADTAREIGSPDVITIRADVSKVDDCRSLVEETMNHFGRLDHLVNNAGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVPH-LRYTKGKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVELG-SDVGVTIVTPGFIESELTQGKFLTGEGRIQIDENLRDAQV 768
            V  KV ++TGASSGIGE +A +              E+ L E+   A+++ +P  + + ADV+   +   +++  ++HFG +D +VN+AG S  +   D  N+  +  ++++N  G+++  +  +P+ L+ + G I+ L+S + +      + Y A+KAA+    ++L  EL  + V VT ++PG +++ +T+G    GE +    +N+ DA V
Sbjct:    4 VKEKVAVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEI---AQQLNTPAKV-VSADVTVKSNIDDMLKAVIDHFGHIDIVVNSAGQSLSSKITD-YNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMVDTPMTEGTDF-GERKKLEAQNIADAVV 211          
BLAST of CX047557 vs. ExPASy Swiss-Prot
Match: DRS7B_BOVIN (Dehydrogenase/reductase SDR family member 7B OS=Bos taurus GN=DHRS7B PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.629e-17
Identity = 62/197 (31.47%), Postives = 98/197 (49.75%), Query Frame = 1
Query:  133 VSGKVVIITGASSGIGEHLAYEYXXXXXXXXXXXXXEKSLEEVADTAREIGSPDV-----ITIRADVSKVDDCRSLVEETMNHFGRLDHLVNNAGISSVALFEDIVNITDFKQIMNINFWGSVYTTRFAVPHL-RYTKGKIVVLSSAASWLTAPRMSFYNASKAALVLFFETLRVELGS-DVGVTIVTPGFIESELT 702
            V   VV+ITGA+SG+G   A  +              ++LEE++       +P V      T+  D++          E +  FG +D L+NNAGIS      D     D K++M  N++G V  T+  +P + R  +G +V +SS    ++ P  S Y ASK A   FF+ LR E+   D+ VT+++PG+I + L+
Sbjct:   50 VRNAVVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAASRAPGVQTHKPCTVTFDLADPGAIAGAASEILQCFGHVDVLINNAGISYRGAIVDTSPDVD-KRVMETNYFGPVALTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQAFFDCLRAEVEQHDIEVTVISPGYIHTNLS 245          
The following BLAST results are available for this feature:
BLAST of CX047557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
DRS7B_XENLA1.473e-1829.18Dehydrogenase/reductase SDR family member 7B OS=Xe... [more]
DHI1_MOUSE1.924e-1831.96Corticosteroid 11-beta-dehydrogenase isozyme 1 OS=... [more]
DRS7B_XENTR2.513e-1831.37Dehydrogenase/reductase SDR family member 7B OS=Xe... [more]
DRS7B_RAT4.287e-1833.85Dehydrogenase/reductase SDR family member 7B OS=Ra... [more]
DHI1B_XENLA4.287e-1831.16Hydroxysteroid 11-beta-dehydrogenase 1-like protei... [more]
DHI1L_DANRE7.312e-1832.51Hydroxysteroid 11-beta-dehydrogenase 1-like protei... [more]
DHI1_RAT9.550e-1831.96Corticosteroid 11-beta-dehydrogenase isozyme 1 OS=... [more]
Y2049_STAEQ1.247e-1728.50Uncharacterized oxidoreductase SERP2049 OS=Staphyl... [more]
Y2036_STAES1.247e-1728.50Uncharacterized oxidoreductase SE_2036 OS=Staphylo... [more]
DRS7B_BOVIN1.629e-1731.47Dehydrogenase/reductase SDR family member 7B OS=Bo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_14H02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14H02-P3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047557 ID=CX047557; Name=CX047557; organism=Citrus sinensis; type=EST; length=832bp
ATGGATTTGATTAACAAGTTCCTTAATCTTGTGGCACCCCCCTTCACCTT
ATTCTCCCTGTGCCTCTTCTTACCACCATTTCTATGTTACAAGTTCTTAC
TCTCCGTCTTTAACTCCATATTCAGTGAAGATGTTTCCGGAAAGGTCGTC
ATCATCACCGGTGCTTCCTCCGGCATCGGAGAGCACTTGGCGTATGAGTA
TGCTAGAAGAGGAGCCTGCCTAGCTCTATGCGCCCGCAGGGAAAAGAGTC
TTGAAGAAGTTGCCGATACAGCGCGTGAAATCGGCTCTCCTGATGTTATC
ACGATTCGTGCTGACGTTTCAAAAGTTGATGACTGTAGGAGCCTTGTTGA
AGAAACTATGAATCACTTTGGCAGATTGGATCATCTTGTGAATAATGCTG
GGATTTCTTCAGTTGCCCTGTTCGAAGATATTGTTAATATCACCGATTTT
AAGCAAATAATGAACATAAATTTCTGGGGATCAGTTTATACCACTCGATT
TGCGGTTCCACATCTTAGATATACCAAAGGCAAGATCGTGGTTTTATCAT
CCGCTGCTTCATGGCTAACTGCACCAAGAATGAGCTTTTACAATGCAAGC
AAAGCGGCGTTGGTACTCTTTTTCGAAACATTAAGGGTCGAACTTGGTTC
CGACGTTGGTGTAACAATTGTTACGCCTGGGTTCATAGAGTCGGAATTAA
CCCAAGGAAAATTCTTAACGGGAGAAGGCAGAATTCAGATAGATGAAAAC
TTAAGAGATGCTCAAGTGAGCACTATCCCAGTTCAATCAGCGTGGTCATG
TGCAAAGGCGATAGTGAACAGTGTATGCCGCG
back to top