CX047544

Overview
NameCX047544
Unique NameCX047544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047544 vs. ExPASy Swiss-Prot
Match: THIO1_SYNY3 (Thioredoxin-like protein slr0233 OS=Synechocystis sp. (strain PCC 6803) GN=slr0233 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.465e-11
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:  241 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPT-EYYGPRKAELLVRYLKKFV 501
            +LVDFYA WCG C+ +AP L++     + L++ I + K+D DKY  +A++ +I + PTL +F  G P     G ++A  L++ L+ FV
Sbjct:   21 VLVDFYATWCGPCQMMAPILEQVG---SHLRQQIQVVKIDTDKYPAIATQYQIQSLPTLVLFKQGQPVHRMEGVQQAAQLIQQLQVFV 105
[Close]
BLAST of CX047544 vs. ExPASy Swiss-Prot
Match: TXND5_HUMAN (Thioredoxin domain-containing protein 5 OS=Homo sapiens GN=TXNDC5 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.366e-11
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 1 
Query:  181 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAA----PILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIP-TEYYGPRKAELLVRYL 489
            G V+ L E+NFD  I+      + FYAPWCGHCK LAP  +E +    P LA +K    IA+VD      + SK  +  +PTL +F  G   +E+ G R  + L R++
Sbjct:  322 GTVLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVK----IAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 424
The following BLAST results are available for this feature:
BLAST of CX047544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
THIO1_SYNY32.465e-1138.64Thioredoxin-like protein slr0233 OS=Synechocystis ... [more]
TXND5_HUMAN9.366e-1138.89Thioredoxin domain-containing protein 5 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14G07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14G07-N13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047544 ID=CX047544; Name=CX047544; organism=Citrus sinensis; type=EST; length=877bp
TGCATTCCATTTTGCTCAAAGCGAAACTGAAAACAAATCACATCGAAATT
GAAGATGCGAGGGATGAGTAAAGGTAGAATATGGATCTTATTGTGTCTGT
TGTTATTGACAGGAAGAGGTATGATGTTATTGACAGGAAGAGGCTTGTCT
TCGGAAGAAGAAACAAAATTCAAAATTGACGGGAAAGTAATAGAACTTGA
CGAATCCAACTTCGATTCTGCAATCTCGTCTTTTGATTACATTTTAGTCG
ATTTTTACGCTCCTTGGTGCGGTCACTGCAAGCGCCTCGCTCCTCAGTTA
GACGAAGCTGCTCCGATACTTGCTAAATTGAAAGAGCCAATTGTAATAGC
AAAAGTAGACGCTGACAAGTACAGCCGTCTTGCTAGTAAGCAAGAGATTG
ATGCATTTCCTACATTGAAGATATTTATGCATGGGATTCCTACGGAATAT
TATGGACCTAGAAAAGCAGAATTGCTTGTTCGTTATCTTAAGAAATTTGT
TGCCCCTGATGTCTCCATTCTTAATTCAGATGCGGAAGTTTCTGACTTTG
TTGAAAATGCTGGTACTTTCTTTCCCCTATTTATTGGTTTTGGGTTGGAT
AAATCAGTCATGTCAAACTTAGCTTTGAAGTATAAGAAAAAGGCCTGGTT
TGCTGTCGCTAAGGATTTCTCTGAGGACACCATGGTGTTGTATGATTTTG
ACAAAGTTCCGGCTTTGGTTGCTCTTCAGCCGAGTTACAATGAGCACAAC
ATTTTTTATGGCCCCTTTGATGAGGAGTTTTTGGAGGAGTTTATAAAACA
AAATTTCCTTCCTCTGTCTGTGCCTATTAACCAAGACACACTGAATCTTT
TGAAAGATGATAAAAGGAAAATTGTCC
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