CX047526

Overview
NameCX047526
Unique NameCX047526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS13_GILMI (40S ribosomal protein S13 OS=Gillichthys mirabilis GN=rps13 PE=2 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 6.225e-42
Identity = 83/103 (80.58%), Postives = 94/103 (91.26%), Query Frame = 2
Query:    2 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 310
            QIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + L P WKY S+TAS LVA
Sbjct:   49 QIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLAPNWKYXSSTASALVA 151          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS13_CANMA (40S ribosomal protein S13 OS=Candida maltosa GN=RPS13 PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 6.225e-42
Identity = 82/103 (79.61%), Postives = 93/103 (90.29%), Query Frame = 2
Query:    2 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 310
            QIGVILRD+HG++Q K VTG+K+LRILK++GLAPE+PEDLY LIKKAVA+RKHLERNRKDKDSKFRLIL+ESRIHRLARYY+    LPP WKYES TAS LVA
Sbjct:   49 QIGVILRDAHGVSQAKIVTGNKVLRILKSNGLAPELPEDLYFLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTVSVLPPNWKYESATASALVA 151          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS13_PLUXY (40S ribosomal protein S13 OS=Plutella xylostella GN=RpS13 PE=2 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 1.387e-41
Identity = 84/103 (81.55%), Postives = 93/103 (90.29%), Query Frame = 2
Query:    2 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 310
            QIGV+LRDSHG+AQV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+ KHLERNRKDKDSKFRLILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:   49 QIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMGKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS13_CHOPR (40S ribosomal protein S13 OS=Choristoneura parallela GN=RpS13 PE=2 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.811e-41
Identity = 84/103 (81.55%), Postives = 92/103 (89.32%), Query Frame = 2
Query:    2 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 310
            QIGV LRDSHG+ QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:   49 QIGVKLRDSHGVVQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS13_MUSDO (40S ribosomal protein S13 (Fragment) OS=Musca domestica GN=RpS13 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.089e-41
Identity = 82/103 (79.61%), Postives = 92/103 (89.32%), Query Frame = 2
Query:    2 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 310
            +IG+ILRDSHG+AQV+ V G+KILRI+K+ GL P+IPEDLYH+IKKAVAIRKHLERNRKDKD KFRLILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:   12 KIGIILRDSHGVAQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 114          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS13_DROME (40S ribosomal protein S13 OS=Drosophila melanogaster GN=RpS13 PE=2 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 3.089e-41
Identity = 82/103 (79.61%), Postives = 92/103 (89.32%), Query Frame = 2
Query:    2 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 310
            +IG+ILRDSHG+AQV+ V G+KILRI+K+ GL P+IPEDLYH+IKKAVAIRKHLERNRKDKD KFRLILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:   49 KIGIILRDSHGVAQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS13_CIOIN (40S ribosomal protein S13 OS=Ciona intestinalis GN=RPS13 PE=2 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 4.035e-41
Identity = 83/103 (80.58%), Postives = 91/103 (88.35%), Query Frame = 2
Query:    2 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 310
            QIGVILRDSHG AQV+ VTG++ILR+LKA GLAP++PED+YHLIKKAVA+RKHLERNRKD DSKFRLILVESRIHRL RYYK    LPP WKYES TAS LVA
Sbjct:   49 QIGVILRDSHGXAQVRFVTGNQILRVLKAKGLAPDLPEDIYHLIKKAVAMRKHLERNRKDTDSKFRLILVESRIHRLGRYYKTKGVLPPNWKYESATASALVA 151          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS13_YEAST (40S ribosomal protein S13 OS=Saccharomyces cerevisiae GN=RPS13 PE=1 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 2.615e-40
Identity = 77/102 (75.49%), Postives = 92/102 (90.20%), Query Frame = 2
Query:    2 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 307
            QIGV+LRD+HG+ Q + +TG+KI+RILK++GLAPEIPEDLY+LIKKAV++RKHLERNRKDKD+KFRLIL+ESRIHRLARYY+    LPP WKYES TAS LV
Sbjct:   49 QIGVLLRDAHGVTQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRTVAVLPPNWKYESATASALV 150          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS13_CAEEL (40S ribosomal protein S13 OS=Caenorhabditis elegans GN=rps-13 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.615e-40
Identity = 78/103 (75.73%), Postives = 93/103 (90.29%), Query Frame = 2
Query:    2 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 310
            QIGVILRDSHG+ QV+ + G+KI RILK+ G+APE+PEDLYHL+KKAVAIRKHLER+RKD DSK+RLILVESRIHRLARYYK  ++LPP WKYES TA++LV+
Sbjct:   49 QIGVILRDSHGVGQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVESRIHRLARYYKTKRQLPPTWKYESGTAASLVS 151          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS13_ANOGA (40S ribosomal protein S13 OS=Anopheles gambiae GN=RpS13 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 7.609e-40
Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 2
Query:    2 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 310
            QIG+ILRDSHG+AQV+ V G+K+LRI+KA GL P+IPEDLY LIKKAV+IRKHLERNRKD DSKFRLIL+ESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:   49 QIGIILRDSHGVAQVRFVNGNKVLRIMKAVGLKPDIPEDLYFLIKKAVSIRKHLERNRKDIDSKFRLILIESRIHRLARYYKIKAVLPPNWKYESSTASALVA 151          
The following BLAST results are available for this feature:
BLAST of CX047526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RS13_GILMI6.225e-4280.5840S ribosomal protein S13 OS=Gillichthys mirabilis... [more]
RS13_CANMA6.225e-4279.6140S ribosomal protein S13 OS=Candida maltosa GN=RP... [more]
RS13_PLUXY1.387e-4181.5540S ribosomal protein S13 OS=Plutella xylostella G... [more]
RS13_CHOPR1.811e-4181.5540S ribosomal protein S13 OS=Choristoneura paralle... [more]
RS13_MUSDO3.089e-4179.6140S ribosomal protein S13 (Fragment) OS=Musca dome... [more]
RS13_DROME3.089e-4179.6140S ribosomal protein S13 OS=Drosophila melanogast... [more]
RS13_CIOIN4.035e-4180.5840S ribosomal protein S13 OS=Ciona intestinalis GN... [more]
RS13_YEAST2.615e-4075.4940S ribosomal protein S13 OS=Saccharomyces cerevis... [more]
RS13_CAEEL2.615e-4075.7340S ribosomal protein S13 OS=Caenorhabditis elegan... [more]
RS13_ANOGA7.609e-4078.6440S ribosomal protein S13 OS=Anopheles gambiae GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14F10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14F10-L19-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047526 ID=CX047526; Name=CX047526; organism=Citrus sinensis; type=EST; length=654bp
TCAAATTGGTGTTATTCTTCGTGATTCTCATGGGATTGCTCAAGTGAAGA
GTGTTACTGGGAGCAAAATTTTGAGGATACTTAAGGCTCATGGGCTTGCT
CCTGAAATTCCTGAGGACTTGTACCACCTCATCAAGAAAGCAGTCGCTAT
TAGGAAGCATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAGTTTAGGT
TGATCTTGGTTGAGAGCAGAATCCACCGACTGGCTCGCTACTACAAGAAG
ACAAAGAAGCTTCCACCTGTATGGAAATATGAGTCAACCACTGCCAGCAC
TCTCGTGGCATAGGTGAGATATATTTGGTACCACATTTGGAACTTCCAGG
ATCGTATCTTTGACAAGTGGCCTCAAGTTTTTTCCTTATTTATTGTTATT
CCTTTTATAACGACTTTATGCGAGAAGAGTGAGCTGAATCGATTAGGGCG
GAAATGACGTTTGATGTATTGGACTAGTTCATCATTTGTTCTCTCTGGAT
CCTTTTGTTTCTATTTTTGGTACTTTTGAAATTATGATTCTTAGATGCAT
AATGTTCTCGTTCTAGTGTGGGAATTTCTATGGACGCCATTGACAGGGTT
TGGTTTTGCATGACCTTTCTCTGTTGGTTGGATTTTTTAAAAAAAAAAAA
AAAA
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