CX047526

Overview
NameCX047526
Unique NameCX047526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_METST (30S ribosomal protein S15P/S13e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps15p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.195e-22
Identity = 54/102 (52.94%), Postives = 68/102 (66.67%), Query Frame = 2
Query:    2 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 307
            QIG+ LRD HGI   K+V G KI  ILK +G   E PEDL +LIK+AV IR+HLE N KD  +K  LI +ES+I RL +YY +   LP  W+Y+  TA+ LV
Sbjct:   31 QIGITLRDQHGIPNTKAVLGEKITDILKRNGTDFEYPEDLLNLIKRAVNIREHLEENPKDIHTKRGLIKIESKIRRLVKYYTRNNVLPEGWRYDPKTAALLV 132          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_METMA (30S ribosomal protein S15P/S13e OS=Methanosarcina mazei GN=rps15p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.345e-22
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 2
Query:    2 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 307
            +IG+ILRD +G+   K VTG KI  ILK + +AP +PEDL +LI KA+ +RKHL  N+KD  +K  L L ES+I RL +YYK+ K LP  W Y+  TA  ++
Sbjct:   49 EIGMILRDRYGVPDAKLVTGKKITTILKENNVAPNLPEDLTNLIVKALGLRKHLSTNKKDVHNKRALNLTESKIRRLVKYYKQEKVLPRDWFYKPETAEMMI 150          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_METAC (30S ribosomal protein S15P/S13e OS=Methanosarcina acetivorans GN=rps15p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.082e-21
Identity = 49/102 (48.04%), Postives = 69/102 (67.65%), Query Frame = 2
Query:    2 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 307
            +IG++LRD +G+   K +TG K+  ILK + +AP IPEDL +LI KA+ +RKHL  N+KD  +K  L L ES+I RL +YYK+ K LP  W Y+  TA  ++
Sbjct:   49 EIGMVLRDRYGVPDAKLITGKKVTTILKENNVAPNIPEDLTNLIVKALGLRKHLSVNKKDVHNKRSLNLTESKIRRLVKYYKQEKVLPRDWFYKPETAEMMI 150          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_METM7 (30S ribosomal protein S15P/S13e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps15p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.719e-21
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 2
Query:    5 IGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 307
            IG ILRD +G+  VK VTG  +  I+K  G   E+PEDL++L+KKA+ +R HLE N +D  S   L L+ES+I RL +YY+ TK LP  W+Y   TA  LV
Sbjct:   50 IGNILRDMYGVPSVKLVTGKSVSSIMKEAGFYTEVPEDLFNLMKKAINLRNHLENNPRDTHSTVGLKLIESKIRRLVKYYRGTKVLPAKWRYSPDTARLLV 150          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_METBU (30S ribosomal protein S15P/S13e OS=Methanococcoides burtonii (strain DSM 6242) GN=rps15p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.719e-21
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 2
Query:    5 IGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 307
            IG++LRD++G+  VK  TG K+  IL+ +   P +PEDLY+LI KA+ +RKHL  N KD  +K  L   ES+I RL +YY+ TK LP  WKY+  TA  L+
Sbjct:   50 IGMVLRDNYGVPDVKLATGKKVTEILRDNSEEPNVPEDLYNLIVKAIGLRKHLVVNNKDVHNKRSLQSAESKIRRLVKYYQSTKVLPIDWKYKPETAEMLI 150          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_SULAC (30S ribosomal protein S15P/S13e OS=Sulfolobus acidocaldarius GN=rps15p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.551e-21
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 2
Query:    5 IGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 307
            IG++LRD +G+  VK +TG K+  IL+   + P+IPEDL++L+++AV IR+HL    KDK +K  L  VES+I RLA YYK+T KLP  W Y+   A  LV
Sbjct:   48 IGMVLRDQYGVPLVKQITGRKLTAILQDRNMKPKIPEDLFNLMRRAVNIRRHLFEYPKDKSAKRGLEEVESKIRRLASYYKETGKLPQEWSYDPAKAELLV 148          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_METMP (30S ribosomal protein S15P/S13e OS=Methanococcus maripaludis GN=rps15p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.551e-21
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 2
Query:    5 IGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 307
            IG ILRD +G+  VK +TG  +  I+K  G   E+PEDL++L+KKA+ +R HLE N +D  S   L L+ES+I RL +YY+ TK LP  W+Y   TA  LV
Sbjct:   50 IGNILRDMYGVPNVKLITGKSVSSIMKEAGFYAEVPEDLFNLMKKAINLRNHLENNPRDTHSTVGLKLIESKIRRLVKYYRGTKVLPAKWRYSPETARLLV 150          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_METM5 (30S ribosomal protein S15P/S13e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps15p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.551e-21
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 2
Query:    5 IGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 307
            IG ILRD +G+  VK +TG  +  I+K  G   E+PEDL++L+KKA+ +R HLE N +D  S   L L+ES+I RL +YY+ TK LP  W+Y   TA  LV
Sbjct:   50 IGNILRDMYGVPNVKLITGKSVSSIMKEAGFYAEVPEDLFNLMKKAINLRNHLENNPRDTHSTVGLKLIESKIRRLVKYYRGTKVLPAKWRYSPETARLLV 150          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_METLZ (30S ribosomal protein S15P/S13e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps15p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.551e-21
Identity = 49/103 (47.57%), Postives = 72/103 (69.90%), Query Frame = 2
Query:    2 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 310
            QIG++LRD HG+  VK  TG +I  I++ + L  +IPEDL +L+ KA+ +RKHLE+NRKD  +K +L L E+++ RL +YY  TK+LP  W Y+  TA  L++
Sbjct:   49 QIGLVLRDKHGVPNVKLATGKRINAIVRENDLDTDIPEDLRNLMHKALMMRKHLEQNRKDLHNKRQLQLTEAKVRRLVKYYVGTKRLPLGWVYKPETAEILLS 151          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_PYRFU (30S ribosomal protein S15P/S13e OS=Pyrococcus furiosus GN=rps15p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.638e-21
Identity = 56/108 (51.85%), Postives = 69/108 (63.89%), Query Frame = 2
Query:    5 IGVILRDSHGIAQVKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 307
            IG ILRD +GI  VK             I RIL+ HGLAPEIPEDL  LI++AV +RKHLE++ KD  S   L L+ES+I RL +YYK+  KLP  W+Y+  TA  LV
Sbjct:   50 IGTILRDQYGIPSVKLFKDPDNPNRNLTITRILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKNWRYDPETAKLLV 157          
The following BLAST results are available for this feature:
BLAST of CX047526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RS15_METST4.195e-2252.9430S ribosomal protein S15P/S13e OS=Methanosphaera ... [more]
RS15_METMA9.345e-2250.0030S ribosomal protein S15P/S13e OS=Methanosarcina ... [more]
RS15_METAC2.082e-2148.0430S ribosomal protein S15P/S13e OS=Methanosarcina ... [more]
RS15_METM72.719e-2149.5030S ribosomal protein S15P/S13e OS=Methanococcus m... [more]
RS15_METBU2.719e-2148.5130S ribosomal protein S15P/S13e OS=Methanococcoide... [more]
RS15_SULAC3.551e-2149.5030S ribosomal protein S15P/S13e OS=Sulfolobus acid... [more]
RS15_METMP3.551e-2148.5130S ribosomal protein S15P/S13e OS=Methanococcus m... [more]
RS15_METM53.551e-2148.5130S ribosomal protein S15P/S13e OS=Methanococcus m... [more]
RS15_METLZ3.551e-2147.5730S ribosomal protein S15P/S13e OS=Methanocorpuscu... [more]
RS15_PYRFU4.638e-2151.8530S ribosomal protein S15P/S13e OS=Pyrococcus furi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14F10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14F10-L19-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047526 ID=CX047526; Name=CX047526; organism=Citrus sinensis; type=EST; length=654bp
TCAAATTGGTGTTATTCTTCGTGATTCTCATGGGATTGCTCAAGTGAAGA
GTGTTACTGGGAGCAAAATTTTGAGGATACTTAAGGCTCATGGGCTTGCT
CCTGAAATTCCTGAGGACTTGTACCACCTCATCAAGAAAGCAGTCGCTAT
TAGGAAGCATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAGTTTAGGT
TGATCTTGGTTGAGAGCAGAATCCACCGACTGGCTCGCTACTACAAGAAG
ACAAAGAAGCTTCCACCTGTATGGAAATATGAGTCAACCACTGCCAGCAC
TCTCGTGGCATAGGTGAGATATATTTGGTACCACATTTGGAACTTCCAGG
ATCGTATCTTTGACAAGTGGCCTCAAGTTTTTTCCTTATTTATTGTTATT
CCTTTTATAACGACTTTATGCGAGAAGAGTGAGCTGAATCGATTAGGGCG
GAAATGACGTTTGATGTATTGGACTAGTTCATCATTTGTTCTCTCTGGAT
CCTTTTGTTTCTATTTTTGGTACTTTTGAAATTATGATTCTTAGATGCAT
AATGTTCTCGTTCTAGTGTGGGAATTTCTATGGACGCCATTGACAGGGTT
TGGTTTTGCATGACCTTTCTCTGTTGGTTGGATTTTTTAAAAAAAAAAAA
AAAA
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