CX047526

Overview
NameCX047526
Unique NameCX047526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_METS5 (30S ribosomal protein S15P/S13e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps15p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.033e-20
Identity = 48/102 (47.06%), Postives = 69/102 (67.65%), Query Frame = 2
Query:    5 IGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 310
            IG++LRD +GI   K + G K+ + LK  GLA +IPEDL++LI++AV +R+HL     DK +K  L  +ES+I RL+RYYK+ +KLP  W Y+   A  LV+
Sbjct:   48 IGIVLRDQYGIPLAKPIIGKKVNQFLKDKGLASQIPEDLFNLIRRAVNVRRHLNEYPGDKTAKKGLEEIESKIRRLSRYYKRVEKLPQDWTYDPAKAELLVS 149          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_HYPBU (30S ribosomal protein S15P/S13e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps15p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.033e-20
Identity = 50/102 (49.02%), Postives = 67/102 (65.69%), Query Frame = 2
Query:    5 IGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 310
            IG+ILRD  GI  VK + G  I  +L+  G+   +PEDL+ LI+KAV +R+HLE + KD  +K  L+ +ES+I RLA YYK+  KLP  WKY+   A  LVA
Sbjct:   49 IGIILRDQFGIPLVKPILGKSITEVLEERGIKMVVPEDLFRLIEKAVNLRRHLEEHPKDTHAKKGLLDLESKIRRLAEYYKRVGKLPRDWKYDPQQAKLLVA 150          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_PYRAB (30S ribosomal protein S15P/S13e OS=Pyrococcus abyssi GN=rps15p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.349e-20
Identity = 56/108 (51.85%), Postives = 68/108 (62.96%), Query Frame = 2
Query:    5 IGVILRDSHGIAQVKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 307
            IG ILRD +GI  VK             I RIL+ HGLAPEIPEDL  LIK+AV +RKHLE++ KD  S   L L+ES+I RL +YYK+  KLP  W+Y+   A  LV
Sbjct:   50 IGTILRDQYGIPTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_METS3 (30S ribosomal protein S15P/S13e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps15p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.349e-20
Identity = 53/102 (51.96%), Postives = 66/102 (64.71%), Query Frame = 2
Query:    2 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 307
            +IG+ILRD +GI  VK VTG +I +ILK +  A + PEDL +LIK+AV IR HL  N KD  SK  L ++ESRI RLA YY     LP  W+Y    A+ LV
Sbjct:   30 EIGIILRDQYGIPSVKEVTGERITQILKRNDQAGKYPEDLMNLIKRAVNIRDHLAENPKDLHSKRGLTIIESRIRRLASYYVNEGALPEGWRYNPKEAALLV 131          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_ARCFU (30S ribosomal protein S15P/S13e OS=Archaeoglobus fulgidus GN=rps15p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.349e-20
Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = 2
Query:    5 IGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 280
            IG+ILRD +GI  VK VTG KI +ILK HG+  + PEDL  LIKKA+ +R HLE +RKDK ++  L L+E++I RL+ YYK+   LP  WKY
Sbjct:   50 IGMILRDRYGIPSVKQVTGKKIQKILKEHGVEIKYPEDLKALIKKALKLRAHLEVHRKDKHNRRGLQLIEAKIWRLSSYYKEKGVLPADWKY 141          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_AERPE (30S ribosomal protein S15P/S13e OS=Aeropyrum pernix GN=rps15p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.349e-20
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 2
Query:    5 IGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 310
            IG+ILRD +GI  VK + G  +  +L+  GL P +PEDL  LI+KAV +R+HL+ + KD  +K  LI +ES+I RL +YYK+   LPP WKY+   A  LV+
Sbjct:   48 IGIILRDQYGIPLVKPILGKGVSEVLREKGLHPPLPEDLLMLIRKAVNLRRHLDEHPKDYHAKKGLIDLESKIRRLVKYYKRRGVLPPDWKYDPEAAKLLVS 149          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_CALMQ (30S ribosomal protein S15P/S13e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps15p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.762e-20
Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = 2
Query:    5 IGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 280
            IGVILRD +GI  VK VT  +I  IL+ +GL P+IPEDL  LI++AV IR+HLE + KD  +K  L+L ES+IHRL +YYK+T  LP  + Y
Sbjct:   50 IGVILRDQYGIPLVKIVTNKRITEILEENGLKPQIPEDLMALIRRAVNIRRHLEEHPKDMSAKKGLLLTESKIHRLIKYYKRTGVLPLDFTY 141          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_PYRHO (30S ribosomal protein S15P/S13e OS=Pyrococcus horikoshii GN=rps15p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.926e-20
Identity = 55/108 (50.93%), Postives = 68/108 (62.96%), Query Frame = 2
Query:    5 IGVILRDSHGIAQVKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 307
            IG ILRD +GI  VK             I RIL+ HGLAPEIPEDL  LI++AV +RKHLE++ KD  S   L L+ES+I RL +YYK+  KLP  W+Y+   A  LV
Sbjct:   50 IGTILRDQYGIPTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPRDWRYDPEQAKLLV 157          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_METMJ (30S ribosomal protein S15P/S13e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps15p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.142e-19
Identity = 46/102 (45.10%), Postives = 68/102 (66.67%), Query Frame = 2
Query:    2 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 307
            QIG++LRD + +  VK  TG +I  IL+  GL  EIPEDL +L++KA+ IRKHL  N KD  +K +L + ES++ RL +YY ++ ++P  W Y+  TA  L+
Sbjct:   49 QIGLVLRDRYAVPDVKLATGKRIGEILREKGLESEIPEDLRNLMEKALGIRKHLAENNKDVHNKRQLQIAESKVRRLVKYYVRSGRMPKGWTYKPETAEILL 150          
BLAST of CX047526 vs. ExPASy Swiss-Prot
Match: RS15_METBF (30S ribosomal protein S15P/S13e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps15p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.142e-19
Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = 2
Query:    2 QIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 307
            +IG+ LRD +G+   K +TG KI  ILK + + P +PEDL +LI KA+ +RKHL  N+KD  +K  L L ES+I RL +YY++ K LP  W Y+  TA  ++
Sbjct:   49 EIGMTLRDRYGVPDAKLITGKKITTILKENNVYPNVPEDLTNLIVKALRLRKHLSVNKKDVHNKRALNLTESKIRRLVKYYQQEKVLPRDWFYKPETAEMMI 150          
The following BLAST results are available for this feature:
BLAST of CX047526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RS15_METS51.033e-2047.0630S ribosomal protein S15P/S13e OS=Metallosphaera ... [more]
RS15_HYPBU1.033e-2049.0230S ribosomal protein S15P/S13e OS=Hyperthermus bu... [more]
RS15_PYRAB1.349e-2051.8530S ribosomal protein S15P/S13e OS=Pyrococcus abys... [more]
RS15_METS31.349e-2051.9630S ribosomal protein S15P/S13e OS=Methanobrevibac... [more]
RS15_ARCFU1.349e-2055.4330S ribosomal protein S15P/S13e OS=Archaeoglobus f... [more]
RS15_AERPE1.349e-2048.0430S ribosomal protein S15P/S13e OS=Aeropyrum perni... [more]
RS15_CALMQ1.762e-2055.4330S ribosomal protein S15P/S13e OS=Caldivirga maqu... [more]
RS15_PYRHO3.926e-2050.9330S ribosomal protein S15P/S13e OS=Pyrococcus hori... [more]
RS15_METMJ1.142e-1945.1030S ribosomal protein S15P/S13e OS=Methanoculleus ... [more]
RS15_METBF1.142e-1946.0830S ribosomal protein S15P/S13e OS=Methanosarcina ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14F10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14F10-L19-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047526 ID=CX047526; Name=CX047526; organism=Citrus sinensis; type=EST; length=654bp
TCAAATTGGTGTTATTCTTCGTGATTCTCATGGGATTGCTCAAGTGAAGA
GTGTTACTGGGAGCAAAATTTTGAGGATACTTAAGGCTCATGGGCTTGCT
CCTGAAATTCCTGAGGACTTGTACCACCTCATCAAGAAAGCAGTCGCTAT
TAGGAAGCATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAGTTTAGGT
TGATCTTGGTTGAGAGCAGAATCCACCGACTGGCTCGCTACTACAAGAAG
ACAAAGAAGCTTCCACCTGTATGGAAATATGAGTCAACCACTGCCAGCAC
TCTCGTGGCATAGGTGAGATATATTTGGTACCACATTTGGAACTTCCAGG
ATCGTATCTTTGACAAGTGGCCTCAAGTTTTTTCCTTATTTATTGTTATT
CCTTTTATAACGACTTTATGCGAGAAGAGTGAGCTGAATCGATTAGGGCG
GAAATGACGTTTGATGTATTGGACTAGTTCATCATTTGTTCTCTCTGGAT
CCTTTTGTTTCTATTTTTGGTACTTTTGAAATTATGATTCTTAGATGCAT
AATGTTCTCGTTCTAGTGTGGGAATTTCTATGGACGCCATTGACAGGGTT
TGGTTTTGCATGACCTTTCTCTGTTGGTTGGATTTTTTAAAAAAAAAAAA
AAAA
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