CX047525

Overview
NameCX047525
Unique NameCX047525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX047525 vs. ExPASy Swiss-Prot
Match: RS15_HALWD (30S ribosomal protein S15P/S13e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps15p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.392e-11
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = -1 
Query:  409 QIGVILRDSH----GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK 654
            QIG+ LRD       I  VK  T  K+  IL+ H   PE+PEDL +L+++A+ +R+H++ N +D  +K  L   ES+I RLA YY+
Sbjct:   49 QIGMKLRDEGVKGTPIPDVKLATDKKVTTILEEHNAKPELPEDLRNLMERAIRLRRHVDENGQDMQNKRALQNTESKIRRLASYYR 134
The following BLAST results are available for this feature:
BLAST of CX047525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RS15_HALWD4.392e-1141.8630S ribosomal protein S15P/S13e OS=Haloquadratum w... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14F10_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14F10-L19-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047525 ID=CX047525; Name=CX047525; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTTTAAAAAATCCAACCAACAGAGAAAGGTCATGCAA
AACCAAACCCTGTCAATGGCGTCCATAGAAATTCCCACACTAGAACGAGA
ACATTATGCATCTAAGAATCATAATTTCAAAAGTACCAAAAATAGAAACA
AAAGGATCCAGAGAGAACAAATGATGAACTAGTCCAATACATCAAACGTC
ATTTCCGCCCTAATCGATTCAGCTCACTCTTCTCGCATAAAGTCGTTATA
AAAGGAATAACAATAAATAAGGAAAAAACTTGAGGCCACTTGTCAAAGAT
ACGATCCTGGAAGTTCCAAATGTGGTACCAAATATATCTCACCTATGCCA
CGAGAGTGCTGGCAGTGGTTGACTCATATTTCCATACAGGTGGAAGCTTC
TTTGTCTTCTTGTAGTAGCGAGCCAGTCGGTGGATTCTGCTCTCAACCAA
GATCAACCTAAACTTGGAATCTTTATCCTTCCTGTTCCTCTCTAGATGCT
TCCTAATAGCGACTGCTTTCTTGATGAGGTGGTACAAGTCCTCAGGAATT
TCAGGAGCAAGCCCATGAGCCTTAAGTATCCTCAAAATTTTGCTCCCAGT
AACACTCTTCACTTGAGCAATCCCATGAGAATCACGAAGAATAACACCAA
TTTG
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