CX047523

Overview
NameCX047523
Unique NameCX047523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047523 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 3.475e-47
Identity = 101/209 (48.33%), Postives = 136/209 (65.07%), Query Frame = 1
Query:   58 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 684
            EYDYLFKL+LIGDSGVGKS LL RF+ + +     STIGV+F  R++  D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +   N+  +L+GNK+DL    A+  E  KAFA++  + FMETSA DATNVE AF  +   I + ++ +   AG+N    T+  +G+ +  K+        GCCS
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQ--PAGNNARPPTVQIRGQPVAQKN--------GCCS 202          
BLAST of CX047523 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.539e-47
Identity = 94/192 (48.96%), Postives = 125/192 (65.10%), Query Frame = 1
Query:   61 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTL-PSKGET 633
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ID K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R+H++ N+++MLIGNK+DL     V  E+G+AFA +  L FMETSA  A+NVE AF     +IY+ + +   +  +      + P  G T
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHGAT 194          
BLAST of CX047523 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 4.539e-47
Identity = 96/198 (48.48%), Postives = 132/198 (66.67%), Query Frame = 1
Query:   61 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDS 654
            Y+Y+FK ++IGD GVGKS LL +FT+N+F  +S  TIGVEF TR + ++NK +K QIWDTAGQER+RA+T +YYRGA GALLVYD+TR  T+ ++  WL + R  T+PN ++MLIGNK DL     V+ E+  AFA+Q  L F+E+SA    NVE AF      I++ V +  V+   +G  +  P +  T   +D S
Sbjct:    5 YEYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSVQEGNVDLIPDGGITKNPPQTITDKPQDAS 202          
BLAST of CX047523 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.928e-47
Identity = 93/199 (46.73%), Postives = 126/199 (63.32%), Query Frame = 1
Query:   61 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSS 657
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ID K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R+H++ N+++MLIGNK+DL     V  E+G+AFA +  L FMETSA  A+NVE AF     +IY+ + +   +  +      +  +    N    S+
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNASHGSN 201          
BLAST of CX047523 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.742e-47
Identity = 95/208 (45.67%), Postives = 129/208 (62.02%), Query Frame = 1
Query:   61 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 684
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ID K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R+H+  N+++MLIGNK+DL     V  E+G+AFA +  L FMETSA  A NVE A+     +IY+ + +   +         + ++   I +    S+   +G CS
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQGLFD---------VHNEANGIKIGPQQSITSSVGPCS 201          
BLAST of CX047523 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.742e-47
Identity = 91/171 (53.22%), Postives = 119/171 (69.59%), Query Frame = 1
Query:   61 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 573
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ID K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R+H++ N+++MLIGNK+DL     V  E+G+AFA +  L FMETSA  A+NVE AF     +IY+ + +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of CX047523 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.742e-47
Identity = 91/171 (53.22%), Postives = 119/171 (69.59%), Query Frame = 1
Query:   61 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 573
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ID K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R+H++ N+++MLIGNK+DL     V  E+G+AFA +  L FMETSA  A+NVE AF     +IY+ + +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of CX047523 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.742e-47
Identity = 91/171 (53.22%), Postives = 119/171 (69.59%), Query Frame = 1
Query:   61 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 573
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ID K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R+H++ N+++MLIGNK+DL     V  E+G+AFA +  L FMETSA  A+NVE AF     +IY+ + +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of CX047523 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.742e-47
Identity = 91/171 (53.22%), Postives = 119/171 (69.59%), Query Frame = 1
Query:   61 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 573
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ID K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R+H++ N+++MLIGNK+DL     V  E+G+AFA +  L FMETSA  A+NVE AF     +IY+ + +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
BLAST of CX047523 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.742e-47
Identity = 91/171 (53.22%), Postives = 119/171 (69.59%), Query Frame = 1
Query:   61 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK 573
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ID K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R+H++ N+++MLIGNK+DL     V  E+G+AFA +  L FMETSA  A+NVE AF     +IY+ + +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173          
The following BLAST results are available for this feature:
BLAST of CX047523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RBD2A_ARATH3.475e-4748.33Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB2A_RABIT4.539e-4748.96Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB14_DICDI4.539e-4748.48Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]
RAB2A_MOUSE5.928e-4746.73Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2B_MOUSE7.742e-4745.67Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2A_PONAB7.742e-4753.22Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MACFA7.742e-4753.22Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN7.742e-4753.22Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK7.742e-4753.22Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA7.742e-4753.22Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14F09_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14F09-L17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047523 ID=CX047523; Name=CX047523; organism=Citrus sinensis; type=EST; length=853bp
TACAAGTGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCC
TGATGAGGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAG
GCGTTGGTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAAT
TTGGAATCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAG
GATTGATAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAG
AAAGGTACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCT
TTGCTTGTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAG
GTGGTTGAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGC
TCATTGGCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAG
GATGGGAAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTC
CGCATTGGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTC
AGATATACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGA
ACTGCTTCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGA
TTCATCCGTTCTAAAGAGAATTGGATGCTGCTCAAACTAGGGAGATATAT
TCGGTTACCAGATTTTACAGCATTGGGCAATTTACTTGTACATGATCAAA
GTAATCTTTGTGTAAAATGAAAAACTACCGTCTGGTAAACTGTTTTGAAT
TTTTCCTAAAAGGCCTCTCTCAAAGAACTCTAGATTGTCTGTAATAAAAC
CAA
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