CX047498

Overview
NameCX047498
Unique NameCX047498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.007e-72
Identity = 132/198 (66.67%), Postives = 164/198 (82.83%), Query Frame = 3
Query:    9 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 602
            QV + SATMP + LE+T KFMN PVRILVK+DELTLEGIKQFY+NVE+E++K + LCDLY+++++TQ+VIF NTR KV++LT K++  + TVSA H D+ Q  RD IM EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT  D  M+ +I+KFY+  IEE+P+++  L
Sbjct:  198 QVVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVEQEDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTKLKGENFTVSAIHADLPQADRDTIMNEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDQDVGMMREIEKFYSTQIEEMPADIGAL 395          
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: IF4A_CANAL (ATP-dependent RNA helicase eIF4A OS=Candida albicans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.007e-72
Identity = 132/198 (66.67%), Postives = 165/198 (83.33%), Query Frame = 3
Query:    9 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 602
            Q+ + SATMP + LE+T KFMN PVRILVK+DELTLEGIKQFY+NVE E++K + LCDLY+++++TQ+VIF NTR KV++LT+K+R +  TVSA H D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT  D  M+ +I+KFY+  IEE+P+++  L
Sbjct:  198 QIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEKFYSTQIEEMPADIGAL 395          
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: IF4A_YEAST (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae GN=TIF1 PE=1 SV=3)

HSP 1 Score: 273.092 bits (697), Expect = 1.315e-72
Identity = 136/199 (68.34%), Postives = 165/199 (82.91%), Query Frame = 3
Query:    9 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 605
            QV + SATMP + LE+T KFM  PVRILVK+DELTLEGIKQFYVNVE+EE+K E L DLY+++++TQ+VIF NTRRKV+ LT K+R+   TVSA + D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D   + +++KFY+  IEELPS++A LL
Sbjct:  196 QVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 394          
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: IF4A_YEAS7 (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.315e-72
Identity = 136/199 (68.34%), Postives = 165/199 (82.91%), Query Frame = 3
Query:    9 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 605
            QV + SATMP + LE+T KFM  PVRILVK+DELTLEGIKQFYVNVE+EE+K E L DLY+++++TQ+VIF NTRRKV+ LT K+R+   TVSA + D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D   + +++KFY+  IEELPS++A LL
Sbjct:  196 QVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 394          
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.929e-72
Identity = 131/198 (66.16%), Postives = 165/198 (83.33%), Query Frame = 3
Query:    9 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 602
            QV + SATMP + LE+T KFMN PVRILVK+DELTLEGIKQFY+NVE E++K + LCDLY+++++TQ+VIF NTR KV++LT K+++ + TVSA H D+ Q  RD IM+EFRSGSSR+LI TDLLARGIDVQQVSLVINYDLP+  ENY+HRIGR GRFGRKGVAINFVT  D  M+ +I++FY+  IEE+P+++  L
Sbjct:  198 QVVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTKLKAENFTVSAIHADLPQAERDTIMKEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGVAINFVTERDVGMMREIEQFYSTQIEEMPADIGAL 395          
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: FAL1_CANGA (ATP-dependent RNA helicase FAL1 OS=Candida glabrata GN=FAL1 PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.113e-71
Identity = 128/198 (64.65%), Postives = 164/198 (82.83%), Query Frame = 3
Query:    9 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 602
            QV V SATM PE LEIT+KFMN PV+ILVKRDE+TLEGIKQ+YVNVEKEEWK +TLCD+Y++L ITQ VIF N+++KVDWL  K++  +  V + HGDM Q+ RD +M EFR+G SRVLI+TD+ ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF+T+ D   + +I+K+Y + ++ +P+++++L
Sbjct:  201 QVVVVSATMSPEILEITKKFMNDPVKILVKRDEITLEGIKQYYVNVEKEEWKFDTLCDIYDSLTITQCVIFCNSKKKVDWLAHKLKQSNFAVISMHGDMKQDERDRVMNEFRTGQSRVLISTDVWARGIDVQQVSLVINYDLPEITENYVHRIGRSGRFGRKGVAINFLTKIDASRMKEIEKYYKIKVKPMPADLSEL 398          
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: IF4A_VANPO (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.899e-71
Identity = 129/198 (65.15%), Postives = 166/198 (83.84%), Query Frame = 3
Query:    9 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 602
            QV + SAT+P + LE+T KFM  P+RILVK+DELTLEGIKQFY+NVE+E++K + L DLY+++++TQ+VIF NTRRKV+ LT K+   + TVS+ + D+ Q  RD+IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAINFVT +D   + +I+KFY+  IEELP++VA++
Sbjct:  197 QVVLLSATLPGDVLEVTTKFMRNPIRILVKKDELTLEGIKQFYINVEEEQYKFDCLSDLYDSISVTQAVIFCNTRRKVEELTQKLTESNFTVSSIYSDLPQQERDVIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMREIEKFYSTQIEELPADVAEM 394          
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: FAL1_DEBHA (ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.239e-71
Identity = 130/200 (65.00%), Postives = 164/200 (82.00%), Query Frame = 3
Query:    6 VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 605
            VQV V SAT+  E LE+T KF   PV+ILVKRD++TLEGIKQ+++  EKE+WK +TLCDLY++L ITQ+VIF NT+ KV+WLTD+M+  + TV A HGDM Q+ RD IM +FR+G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAIN VT++D   L DI++FY + I+E+P NV D++
Sbjct:  200 VQVVVVSATLSREVLEVTGKFTTDPVKILVKRDDITLEGIKQYHIQCEKEDWKFDTLCDLYDSLTITQAVIFCNTKVKVNWLTDQMKKANFTVVAMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYVHRIGRSGRFGRKGVAINLVTKEDVDELRDIERFYRIRIKEMPVNVNDIM 399          
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: FAL1_CHAGB (ATP-dependent RNA helicase FAL1 OS=Chaetomium globosum GN=FAL1 PE=3 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.239e-71
Identity = 131/181 (72.38%), Postives = 155/181 (85.64%), Query Frame = 3
Query:    9 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 551
            QV V SAT+P + L++T KFM  PVRILVKRDELTLEG+KQ+++ VEKE+WK +TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HGDM Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLP+  ENY+HRIGRSGRFGRKGVAINFVT +D R+L DI+
Sbjct:  202 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 382          
BLAST of CX047498 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 4.230e-71
Identity = 128/200 (64.00%), Postives = 162/200 (81.00%), Query Frame = 3
Query:    6 VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 605
            VQV V SAT+  E LE+T KF   PV+ILVKRD++TLEGIKQ++V  EKE+WK +TLCDLY+ L ITQ+VIF NT+ KV+WLTD+MR ++ TV + HGDM Q+ RD IM +FR+G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAIN +T++D   L D +K+Y+  I E+P N+ D++
Sbjct:  200 VQVVVVSATLSREVLEMTNKFTTDPVKILVKRDQITLEGIKQYHVQCEKEDWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLTDQMRKQNFTVVSMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGVAINLITKEDVATLRDFEKYYSTKIREMPMNINDIM 399          
The following BLAST results are available for this feature:
BLAST of CX047498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_DEBHA1.007e-7266.67ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]
IF4A_CANAL1.007e-7266.67ATP-dependent RNA helicase eIF4A OS=Candida albica... [more]
IF4A_YEAST1.315e-7268.34ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_YEAS71.315e-7268.34ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_PICST2.929e-7266.16ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]
FAL1_CANGA1.113e-7164.65ATP-dependent RNA helicase FAL1 OS=Candida glabrat... [more]
IF4A_VANPO1.899e-7165.15ATP-dependent RNA helicase eIF4A OS=Vanderwaltozym... [more]
FAL1_DEBHA3.239e-7165.00ATP-dependent RNA helicase FAL1 OS=Debaryomyces ha... [more]
FAL1_CHAGB3.239e-7172.38ATP-dependent RNA helicase FAL1 OS=Chaetomium glob... [more]
FAL1_PICST4.230e-7164.00ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS09_14E06_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14E06-J11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047498 ID=CX047498; Name=CX047498; organism=Citrus sinensis; type=EST; length=819bp
CTAAAGTTCAGGTGGGGGTTTTCTCTGCTACAATGCCTCCTGAGGCCTTG
GAGATTACAAGGAAGTTTATGAACAAGCCTGTGAGAATCTTGGTTAAACG
TGATGAACTCACCCTTGAGGGTATCAAGCAGTTTTATGTCAATGTTGAGA
AGGAAGAATGGAAGCTTGAAACACTCTGTGATCTTTATGAGACTCTGGCC
ATAACCCAGAGTGTCATCTTTGTGAACACTCGGCGAAAGGTCGACTGGCT
TACTGACAAGATGCGAAGCCGTGACCATACAGTCTCTGCCACTCATGGGG
ACATGGATCAGAACACCCGAGATATCATTATGCGTGAATTTCGCTCTGGT
TCTTCTCGTGTTCTCATCACCACTGATCTGTTGGCTCGTGGTATTGATGT
GCAGCAAGTTTCACTTGTCATAAATTATGATCTGCCGACTCAACCAGAAA
ACTACCTTCACCGTATTGGACGAAGTGGTCGATTTGGAAGAAAGGGTGTT
GCCATTAATTTTGTGACAAGGGATGATGAGAGAATGCTTTTTGATATTCA
AAAGTTCTATAACGTGGTCATTGAGGAGCTGCCTTCAAATGTTGCTGACC
TTCTTTGAGGAGGTTCTGTTTTTTGTAAGTTTGTCGAGGCAAGAAGGGGT
TTCCTGATTTTGCAAGTACTATTTAATGTGGTGGATATTTTCTCCCCTTT
TTTTTTTTTTTTTGGTTTCTTCTTCCTTTCCGTCTAGTGTCTTAAATTAA
TGTTGTTCTCAAACATATCCGACCATTTAATCATATGGGTCATGCACATT
TGCAAGCTGCACAAAAAAA
back to top