CX047490

Overview
NameCX047490
Unique NameCX047490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ERPA_ECOLU (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.188e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = -3 
Query:  418 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 741
            +  TD    ++K L A E + N   LR+ +  GGCSGFQY F  D ++N  D   EK GV LVVD +S  ++ G +VDY E L  S F+V TNP+A   C C SSF +
Sbjct:    9 LEFTDAAANKVKSLIADEDNPN-LKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIV-TNPNAKSTCGCGSSFSI 114
[Close]
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ERPA_ECOLI (Iron-sulfur cluster insertion protein erpA OS=Escherichia coli (strain K12) GN=erpA PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.188e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = -3 
Query:  418 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 741
            +  TD    ++K L A E + N   LR+ +  GGCSGFQY F  D ++N  D   EK GV LVVD +S  ++ G +VDY E L  S F+V TNP+A   C C SSF +
Sbjct:    9 LEFTDAAANKVKSLIADEDNPN-LKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIV-TNPNAKSTCGCGSSFSI 114
[Close]
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ERPA_ECOLC (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.188e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = -3 
Query:  418 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 741
            +  TD    ++K L A E + N   LR+ +  GGCSGFQY F  D ++N  D   EK GV LVVD +S  ++ G +VDY E L  S F+V TNP+A   C C SSF +
Sbjct:    9 LEFTDAAANKVKSLIADEDNPN-LKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIV-TNPNAKSTCGCGSSFSI 114
[Close]
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ERPA_ECOL6 (Iron-sulfur cluster insertion protein erpA OS=Escherichia coli O6 GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.188e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = -3 
Query:  418 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 741
            +  TD    ++K L A E + N   LR+ +  GGCSGFQY F  D ++N  D   EK GV LVVD +S  ++ G +VDY E L  S F+V TNP+A   C C SSF +
Sbjct:    9 LEFTDAAANKVKSLIADEDNPN-LKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIV-TNPNAKSTCGCGSSFSI 114
[Close]
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ERPA_ECOL5 (Iron-sulfur cluster insertion protein erpA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.188e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = -3 
Query:  418 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 741
            +  TD    ++K L A E + N   LR+ +  GGCSGFQY F  D ++N  D   EK GV LVVD +S  ++ G +VDY E L  S F+V TNP+A   C C SSF +
Sbjct:    9 LEFTDAAANKVKSLIADEDNPN-LKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIV-TNPNAKSTCGCGSSFSI 114
[Close]
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ERPA_ECOK1 (Iron-sulfur cluster insertion protein erpA OS=Escherichia coli O1:K1 / APEC GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.188e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = -3 
Query:  418 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 741
            +  TD    ++K L A E + N   LR+ +  GGCSGFQY F  D ++N  D   EK GV LVVD +S  ++ G +VDY E L  S F+V TNP+A   C C SSF +
Sbjct:    9 LEFTDAAANKVKSLIADEDNPN-LKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIV-TNPNAKSTCGCGSSFSI 114
[Close]
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ERPA_ECOHS (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli O9:H4 (strain HS) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.188e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = -3 
Query:  418 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 741
            +  TD    ++K L A E + N   LR+ +  GGCSGFQY F  D ++N  D   EK GV LVVD +S  ++ G +VDY E L  S F+V TNP+A   C C SSF +
Sbjct:    9 LEFTDAAANKVKSLIADEDNPN-LKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIV-TNPNAKSTCGCGSSFSI 114
[Close]
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ERPA_ECODH (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli (strain K12 / DH10B) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.188e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = -3 
Query:  418 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 741
            +  TD    ++K L A E + N   LR+ +  GGCSGFQY F  D ++N  D   EK GV LVVD +S  ++ G +VDY E L  S F+V TNP+A   C C SSF +
Sbjct:    9 LEFTDAAANKVKSLIADEDNPN-LKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIV-TNPNAKSTCGCGSSFSI 114
[Close]
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ERPA_ECOBW (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli (strain K12 / BW2952) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.188e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = -3 
Query:  418 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 741
            +  TD    ++K L A E + N   LR+ +  GGCSGFQY F  D ++N  D   EK GV LVVD +S  ++ G +VDY E L  S F+V TNP+A   C C SSF +
Sbjct:    9 LEFTDAAANKVKSLIADEDNPN-LKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIV-TNPNAKSTCGCGSSFSI 114
[Close]
BLAST of CX047490 vs. ExPASy Swiss-Prot
Match: ERPA_ECO8A (Iron--sulfur cluster insertion protein erpA OS=Escherichia coli O8 (strain IAI1) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.188e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = -3 
Query:  418 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 741
            +  TD    ++K L A E + N   LR+ +  GGCSGFQY F  D ++N  D   EK GV LVVD +S  ++ G +VDY E L  S F+V TNP+A   C C SSF +
Sbjct:    9 LEFTDAAANKVKSLIADEDNPN-LKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIV-TNPNAKSTCGCGSSFSI 114
The following BLAST results are available for this feature:
BLAST of CX047490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 314
Match NameE-valueIdentityDescription
ERPA_ECOLU1.188e-1644.44Iron--sulfur cluster insertion protein erpA OS=Esc... [more]
ERPA_ECOLI1.188e-1644.44Iron-sulfur cluster insertion protein erpA OS=Esch... [more]
ERPA_ECOLC1.188e-1644.44Iron--sulfur cluster insertion protein erpA OS=Esc... [more]
ERPA_ECOL61.188e-1644.44Iron-sulfur cluster insertion protein erpA OS=Esch... [more]
ERPA_ECOL51.188e-1644.44Iron-sulfur cluster insertion protein erpA OS=Esch... [more]
ERPA_ECOK11.188e-1644.44Iron-sulfur cluster insertion protein erpA OS=Esch... [more]
ERPA_ECOHS1.188e-1644.44Iron--sulfur cluster insertion protein erpA OS=Esc... [more]
ERPA_ECODH1.188e-1644.44Iron--sulfur cluster insertion protein erpA OS=Esc... [more]
ERPA_ECOBW1.188e-1644.44Iron--sulfur cluster insertion protein erpA OS=Esc... [more]
ERPA_ECO8A1.188e-1644.44Iron--sulfur cluster insertion protein erpA OS=Esc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_14E02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-14E02-J3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047490 ID=CX047490; Name=CX047490; organism=Citrus sinensis; type=EST; length=761bp
TTTTTTTTTTTTTTTTTCTCATCGAAACCAATCTTGCAGTTCCTGCTATT
ATTTGCCAGCATGGCGGCAGCAAATCATGGTTGCCTACAAACGGCTAAGG
AGAAATAGTACAATATAAATTCAATTCTCGATCCGCAAATGTGATGTAGT
ATGAAAATGGCACGTGTCTGAACATGACATTCCTTGTTGATAGATAAGCG
GCACATGCTTCAAACACCAAATGATATAGTAAAGATACATATGTCGCAAA
AAAAGGGGAAAAAATTACAAAAATGGATCTGATTCAAATGAATTGTAATG
GAAAAAATTGAAGTAAAAAAGTTGATTCAAAGATCCATTATAGCAAAACT
TAAATAGTCTCTCAGCCAAATTAAAAGTATGGTATCATGGTTCATGGAAT
GGGAAAAACTACTGTTTCACCATAAAGGAGCTTTTACAACTGCATCCGCC
CACTGCACTAGGATTTGTACTCACCACGAATGCAGAGCGGATCAGCTCCT
CAACATAATCAACAGTTGCCCCCTTTACAAAATCATATGAAATATTATCA
ACCACCAATTTAACTCCATCCTTCTCAAAAATCCTGTCATCAGGGTTGAT
TTTATAGTCCAAATCAAAAGCATATTGGAAACCAGAACATCCACCAGTTT
CCACACCCAACCGAAGCATAGCTTTATTGTCTGATGTTTCACTGGCTTGG
AGTTCTTTCATTCTTTTGATGAAATTATCAGTCATGTGAATGGAATCTAA
AGAAGGGGAAG
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